Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B06
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = -2

Query: 477 FFFXXGGGGGXXXFXKKNPGXGGFLXXRGXGXXXXXGAXXPXPHPXGXGG 328
           F F  GGGGG         G GG     G G     G   P P P   GG
Sbjct: 18  FLFPSGGGGGGGGGCGGGCGGGG---GCGGGGGCGGGCAPPPPPPACGGG 64


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 462 GGGGGXXXFXKKNPGXGGFLXXRGXGXXXXXGAXXP 355
           GG GG   F    PG GG    RG G     G   P
Sbjct: 556 GGMGGGGGFRGGPPGRGGMANRRGRGKRPGDGRGGP 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,387
Number of Sequences: 27780
Number of extensions: 202123
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)