Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B04
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   4.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    26   6.3  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    26   6.3  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   8.3  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   8.3  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   8.3  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 466 DSPHQ---WRQFSASFTFGEEFPFGRCESSGF 552
           DSP Q   W++  A F F   F FG+ ++S F
Sbjct: 408 DSPSQNAEWQKTPAGFQFSHHFGFGKLDASKF 439


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 PRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPPVPHLIR 253
           PR+R +  PP   A  RS S+  +L P   A     PPP P  ++
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAALPPRTMA-----PPPAPSRVQ 41


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +2

Query: 71  PEFSRLARSNTELVFSPRKRCSHQPP---PFTALRRS-FSSTFSLIPEERAISPERPPPV 238
           P  + +++  + +   PR R S   P   P +A + S F STFS + E+  +S   P  +
Sbjct: 177 PRAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRSTFSPLREQDQLSTISPNSL 236

Query: 239 PHLIRLLTWGPRL 277
               RL  +GP L
Sbjct: 237 LPAQRLSYYGPTL 249


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 706 EFNDTGLL*RSRKTTHGSGGMSMFCSL 786
           +FN    L RS  T H   G+S+FCS+
Sbjct: 43  KFNLAWALVRSDSTQHVQQGLSLFCSI 69


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 188 SLIPEERAISPERPPPVPHLIRLLTWGPRLMLRPVFALLSIVSHPAWKQ 334
           S +P+   I P  PPPVP +    +   +  L+P  AL +  S  +WKQ
Sbjct: 207 STLPKISPIPPSNPPPVPSV--SYSQKQQKQLKPKAALEA--SQNSWKQ 251


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 290 VFALLSIVSHPAWKQ-ILVVLPTLWIAASLFIFW 388
           V + L+++ +  W Q IL  +P  W+  ++F+ W
Sbjct: 93  VTSFLNVIEY--WSQLILYYVPVYWLLKAIFLIW 124


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 638 DQRD*ASALNRTYEQLLSISVAQTVLLFRKPLLSHRPNGNS-SPNVKLA 495
           D+RD  S + R  E    +S A+    FRK LL    N  S   +V+LA
Sbjct: 135 DKRDLTSLVTRVKELARKLSAARLAFRFRKVLLICNDNKESIERSVELA 183


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = +2

Query: 395  VQCPISVLKMIARVISSKGNNKPRTVLISGGSSVQALHLARNFHSAGARVVAFE--IEGQ 568
            V+ P++  KM     +++  N      I      + LHLA          + F+   E  
Sbjct: 888  VKVPVNWCKMSGTKKTNRYYNDELRKKIKKLLEAEELHLAIMSRMQEKFYIRFDSNYEQW 947

Query: 569  FALLKYSAAVHKFYSVPRPNPADPLAYARALKAIVEQESVVFY 697
             AL+KY+A++  F+S+ +   A    Y R    I+EQ+    Y
Sbjct: 948  LALIKYTASIDCFFSLSQAAAALGEPYCR--PEIIEQKDGHLY 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,957
Number of Sequences: 5004
Number of extensions: 66151
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)