Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B04
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 761 PLPCVVLRERHNRPVSLNSPARRIQQTLVPL 669
           P PC VL      P +L +  RRI  T V L
Sbjct: 192 PRPCNVLATSLTEPYTLRNYGRRINCTYVAL 222


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 173 FSSTFSLIPEERAISPERPPPVPHLIRLLTWGPRLMLRPVFALLS 307
           +   F  + EE+   P R P +  +   L       LRP   LL+
Sbjct: 259 YRRNFKKMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLT 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 555 SKATTLAPAEWKFLAKCKACTE 490
           S+ T+  P +WK L KC  C +
Sbjct: 411 SRRTSPPPEDWKPLDKCYFCLD 432


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 247  QVRHGRRSLGANGTFF 200
            ++ HG+R+L A  T+F
Sbjct: 1259 ELNHGKRTLPAKNTYF 1274


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 247  QVRHGRRSLGANGTFF 200
            ++ HG+R+L A  T+F
Sbjct: 1255 ELNHGKRTLPAKNTYF 1270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,877
Number of Sequences: 438
Number of extensions: 5178
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)