Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B02
         (899 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   3.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   4.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 CKFYNYLVFMCFFLFRLLVLCKKSFVTCYKKRICL 214
           C +Y Y  F+ F +  L +LC   FV      +C+
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 264 FFFLCILFGCMGYFRFSRHIRFL 196
           FF LCI +    +  F+ H+ FL
Sbjct: 141 FFLLCIYYFYCAFIIFTVHLLFL 163


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 341 FGSTRKHCLDKPKQVLSLLSRMI 409
           F   +KH   KP Q+L+LL  +I
Sbjct: 34  FRLCKKHKTKKPVQILALLQEII 56



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 418 LCEDHPAQQ*QHLLGLVQAVLPCTSEGT 335
           LC+ H  ++   +L L+Q ++P +  GT
Sbjct: 36  LCKKHKTKKPVQILALLQEIIPKSYFGT 63


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 341 FGSTRKHCLDKPKQVLSLLSRMI 409
           F   +KH   KP Q+L+LL  +I
Sbjct: 34  FRLCKKHKTKKPVQILALLQEII 56



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 418 LCEDHPAQQ*QHLLGLVQAVLPCTSEGT 335
           LC+ H  ++   +L L+Q ++P +  GT
Sbjct: 36  LCKKHKTKKPVQILALLQEIIPKSYFGT 63


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 195 IKNEYVWRT*SSPYTRR 245
           IKNE +W+     YTR+
Sbjct: 258 IKNEIIWKKLREDYTRQ 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,797
Number of Sequences: 336
Number of extensions: 4093
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)