Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B02
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    81   3e-16
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.29 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.3  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   8.4  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   8.4  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
 Frame = +1

Query: 292 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 471
           +K++ E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 472 XXXXXXXXX--KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 645
                      +K+ F IKEG +++I + F VQ E++ GL+YVQ   R G  VDK + M+
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMI 148

Query: 646 GSYPP 660
           GSY P
Sbjct: 149 GSYGP 153



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 41/76 (53%)
 Frame = +3

Query: 588 VRAEDLQTGRSS*QDDSYGRLLSPQN*XQSYTTPPEDAPSGMMAXGSYSVXSLFTDDDKN 767
           VR       ++S    SYG   +P +    +T+ P++AP+GM+A G Y     F DDDK 
Sbjct: 134 VRRRGFVVDKTSTMIGSYGPSETPYD----FTSEPDEAPTGMLARGHYEANGKFVDDDKV 189

Query: 768 VHLXWEWSFXIXKDWK 815
           VH  + W+F + K WK
Sbjct: 190 VHHEFVWAFDVAKSWK 205


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 292  EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 399
            EKT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -3

Query: 717 PSSRTVHPRGASYKTDXSFGGIGA-DHMSHLVNWNAQSVGLLHVLQTVHDLAL--NDKID 547
           P+SR++  R +SY T  S   IG    +S   N +   +   +  ++  DL+L  +D  D
Sbjct: 11  PTSRSIQSRNSSYSTS-SNERIGTPSTISLSENSDLSKLQSTNDFESREDLSLTSDDNND 69

Query: 546 P-YSVLYTLLYHE 511
           P Y + Y  +YH+
Sbjct: 70  PEYVMCYNTVYHQ 82


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 722  RLVQRXQPLHRRRQERPPPXGVE 790
            R+V R QPLH R+  R  P  ++
Sbjct: 1068 RIVSRLQPLHSRQYTRESPFSIK 1090


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 514 VIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVG 648
           ++  G+   ++I  I   ++VHG+KY      +G+  D    +VG
Sbjct: 265 LLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 537 PNKDRFYRSTRDRARSEVRAEDLQTGRSS*QDDS 638
           P+     R TR RARS   A  ++   SS  DDS
Sbjct: 234 PDLSSLIRLTRSRARSSNEASYVEKDESSNSDDS 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,612
Number of Sequences: 5004
Number of extensions: 64420
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)