Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_B02
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 79 5e-15
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 70 3e-12
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 69 7e-12
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 2.9
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 29 3.8
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 5.0
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 29 5.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 8.8
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 8.8
03_02_0930 - 12480983-12481888 28 8.8
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 79.0 bits (186), Expect = 5e-15
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = +1
Query: 289 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 462
P +I+E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 94 PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPD 149
Query: 463 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 642
K+ F +KEG YR++ F V IV GL+Y ++ G+ VDK M
Sbjct: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEM 209
Query: 643 VGSYPPK 663
+G++ P+
Sbjct: 210 LGTFSPQ 216
Score = 55.2 bits (127), Expect = 7e-08
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +3
Query: 654 SPQN*XQSYTTPPEDAPSGMMAXGSYSVXSLFTDDDKNVHLXWEWSFXIXKDW 812
SPQ +Y TP E PSG+ A GSYS + F DDD+ +L ++F I +DW
Sbjct: 214 SPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDW 266
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 69.7 bits (163), Expect = 3e-12
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Frame = +1
Query: 289 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 462
P +I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 79 PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGRPD 134
Query: 463 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 642
K F +KEG Y+++ F V IV GL+Y ++ G+ VD M
Sbjct: 135 IFLPLPVEPNA-KGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEM 193
Query: 643 VGSYPPK 663
+G++ P+
Sbjct: 194 LGTFSPQ 200
Score = 55.6 bits (128), Expect = 5e-08
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 633 DSYGRLL---SPQN*XQSYTTPPEDAPSGMMAXGSYSVXSLFTDDDKNVHLXWEWSFXIX 803
DS+ +L SPQ +Y TP E PSGM A GSYS + F DDD+ +L ++F I
Sbjct: 188 DSHKEMLGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCYLEINYTFDIR 247
Query: 804 KDW 812
++W
Sbjct: 248 REW 250
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 68.5 bits (160), Expect = 7e-12
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 289 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 468
P+ ++E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 42 PQVPLKEQLELDKDDESLRRWKEQLLGQVDTEQ-LGETAEPE---VKVLNLTILSPDRPD 97
Query: 469 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 645
+K F +K+G Y R FIV IV GLKY ++ GV V+ M+
Sbjct: 98 LVLPIPFVPDEKGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVML 157
Query: 646 GSYPPK 663
G++ P+
Sbjct: 158 GTFSPQ 163
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 280 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEP 402
KPPP E + AAD E E+ RK +E A V P
Sbjct: 35 KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP 75
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 510 IRDKGGCTIPNKD--RFYRSTRDRARSEVRAEDLQTGRSS*QDDSYGRLLSPQN*XQSYT 683
I D+G C P + R + RD A SEV+ ED + + + +++ S +
Sbjct: 108 IDDRGACFFPAPEGGRKRKRERDEAGSEVKGEDRRRRQPAAEEEDGDEASSGVEERSGES 167
Query: 684 TPPEDAPSGMMAXGS 728
P D P A G+
Sbjct: 168 RPEADEPDRKKARGT 182
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 295 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 450
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 525 GCTIPNKDRFYRSTRDRARSEVRAEDLQTGRSS*QDDSYGRL 650
G D F+ ST RS VR DL+TG+ Q + GRL
Sbjct: 91 GLLYGGNDTFFESTGLYHRSSVRRVDLKTGKVLVQHEMDGRL 132
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 680 YDAPRGCTVRDDGARLVQRXQPLHRRRQERPPP 778
Y A V DDG LV+ P H R + PPP
Sbjct: 91 YAASYAHLVSDDGGVLVEHFAPSHIRPRPPPPP 123
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -3
Query: 585 QTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 478
++V +++L+ ++D Y VLY + E+L+ + Q+P+
Sbjct: 286 ESVLNVSLSGQVDDYCVLYCERFMEFLIDMLSQLPT 321
>03_02_0930 - 12480983-12481888
Length = 301
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 528 CTIPNKDRFYRSTRDRARSEVRAEDL 605
C PN++ +Y ++ DRAR E R + L
Sbjct: 66 CYCPNRESYYLNSADRARQEDRQDML 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,509,103
Number of Sequences: 37544
Number of extensions: 436678
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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