Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_B02
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...   105   3e-23
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...   105   3e-23
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    30   2.6  

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score =  105 bits (253), Expect = 3e-23
 Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
 Frame = +1

Query: 277 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 456
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 457 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKM 633
                            + V IKEG  YR+   F VQREI  GL Y  K  R G+ V+  
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENE 132

Query: 634 THMVGSYPPKTXISLIRRP 690
            +M+GSY PK  I   + P
Sbjct: 133 KYMMGSYAPKLEIQEYKSP 151



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = +3

Query: 654 SPQN*XQSYTTPPEDAPSGMMAXGSYSVXSLFTDDDKNVHLXWEWSFXIXKD 809
           +P+   Q Y +P E+APSGMM  G Y V S  TDDD NV+L W+W+  I K+
Sbjct: 140 APKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITKE 191


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score =  105 bits (253), Expect = 3e-23
 Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
 Frame = +1

Query: 277 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 456
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 457 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKM 633
                            + V IKEG  YR+   F VQREI  GL Y  K  R G+ V+  
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENE 132

Query: 634 THMVGSYPPKTXISLIRRP 690
            +M+GSY PK  I   + P
Sbjct: 133 KYMMGSYAPKLEIQEYKSP 151



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = +3

Query: 654 SPQN*XQSYTTPPEDAPSGMMAXGSYSVXSLFTDDDKNVHLXWEWSFXIXKD 809
           +P+   Q Y +P E+APSGMM  G Y V S  TDDD NV+L W+W+  I K+
Sbjct: 140 APKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITKE 191


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 44  FSXKHLWSVIFFGLKNLEIANRCKFYNYLVFMCFFLFRLLVLCKKSFVTCYKKR 205
           F    L+  I F ++N  +    K +  +  +  F+F LL+LCK +    ++K+
Sbjct: 196 FRMSLLFYGILFDVENNWLQTSTKLFQIVPLLLLFIFFLLILCKLNSFKAHRKK 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,357
Number of Sequences: 27780
Number of extensions: 368668
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)