Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A22
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...   147   2e-36
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...   111   1e-25
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    31   0.17 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    28   2.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.7  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    27   4.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.3  

>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score =  147 bits (357), Expect = 2e-36
 Identities = 67/149 (44%), Positives = 102/149 (68%)
 Frame = +1

Query: 280 TPRVLSIQSHVVHGYVGNKSAVFPLQVLGFEVDSINTVQFSTHTAYKHIKGYVLNNDQMK 459
           T R+L+IQS V HGYVGN++A FPLQ+LG++VD+I TV+ S H  Y  +KG  L+ +Q+ 
Sbjct: 4   TKRILAIQSSVCHGYVGNRAATFPLQLLGWDVDAIPTVELSNHAGYPIVKGRTLSAEQIL 63

Query: 460 ELVEGLVLNEVDYYTHFLTGYSRSPDSLREIAKIIKQLREKNPNLIYVCDPVMGDNGKMY 639
           +L +G+       Y   LTGY+R   S++ I +I++ ++ KN    +V DPV+GDNG++Y
Sbjct: 64  DLYKGVSAANPSGYECLLTGYARGIGSVKAIMEIVRSVKSKNKKAFWVFDPVLGDNGRLY 123

Query: 640 VPEEILPVYRDVLVPLADILTPKPIRSRI 726
           V E I+P+YR++L P AD++TP    + I
Sbjct: 124 VEESIIPLYREML-PFADLITPNGFEAEI 151



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 704 PNQFEAELITGIPMKDLNGALRVIQRL 784
           PN FEAE+++G+ +  ++ A + ++ L
Sbjct: 144 PNGFEAEILSGMRINSIDTAFKCVECL 170


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score =  111 bits (268), Expect = 1e-25
 Identities = 56/147 (38%), Positives = 86/147 (58%)
 Frame = +1

Query: 286 RVLSIQSHVVHGYVGNKSAVFPLQVLGFEVDSINTVQFSTHTAYKHIKGYVLNNDQMKEL 465
           RVLSIQS V HGYVGN+SA FPLQ+  +EVD + TV FS H  Y   +G     +++ +L
Sbjct: 13  RVLSIQSSVSHGYVGNRSATFPLQLHEWEVDVVPTVHFSNHLGYGATRGSACIPEEVHDL 72

Query: 466 VEGLVLNEVDYYTHFLTGYSRSPDSLREIAKIIKQLREKNPNLIYVCDPVMGDNGKMYVP 645
           +  L+ +    Y   LTG+  + D ++ I   +   ++ +P ++++ DPVMGD GKMYV 
Sbjct: 73  LNALLQDNGIVYDAILTGFVPNHDIIQVIFDCVLAYKKDHPKVLWLLDPVMGDQGKMYVD 132

Query: 646 EEILPVYRDVLVPLADILTPKPIRSRI 726
             ++  Y+  ++P A  +TP      I
Sbjct: 133 TNVISTYK-AMIPHAFAITPNAFEVEI 158


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 514 TGYSRSPDSLREIAKIIKQLREKNPNLIYVCDPVM-GDNGKMYVPEEILPVYRDVLVPLA 690
           TG   SP+ ++ +A+  K+          V DPVM   +G   V ++I+ V  + L+PL 
Sbjct: 110 TGMLGSPEIVKAVARSAKKFNFSK----LVVDPVMVATSGDSLVTKDIVSVLNEELLPLT 165

Query: 691 DILTP 705
            ++TP
Sbjct: 166 YLVTP 170


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 463 LVEGLVLNEVDYYTHFLTGYSRSPDSLREIAKIIKQLREKNPNLIYVCDPVMGDNGKMYV 642
           L   L    V Y T +   Y       RE+  I+K L   +  ++ V +PV  +    ++
Sbjct: 83  LSRSLKWRPVTYETVYPQTYETQMSEPREVTTIVKDLNNGDSFVLNVTEPVDPE----FL 138

Query: 643 PEEILPVYRDVLVP-LADILTPKPIRSR 723
              I PV+R  L P L+ + +P  I +R
Sbjct: 139 RANIPPVHRKHLPPRLSLVASPGTIPTR 166


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +1

Query: 418 KHIKGYVLNNDQMKELVEGLVLNEVDYYTHFLTGYSRSPDSLREIAKIIKQLREKNPNLI 597
           +H+K +  ++   KE+ + + + E+     +L  +  +P S  +I   +    E+N   I
Sbjct: 507 RHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAERNFQTI 566

Query: 598 Y 600
           Y
Sbjct: 567 Y 567


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 631 KMYVPEEILPVYRDVLVPLADILTPKPIRSRIDH 732
           + Y+   I P+YR +   L +IL  K +R   DH
Sbjct: 236 EFYLDSVITPIYRFIHAQLFEILDGKYVRRERDH 269


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 556 KIIKQLREKNPNLIYVCDPVMGDNGKMYVPEEILPVYRDVLVPLADILTPKPIRSRI 726
           +++++LR      I V     G NGK  V + +      ++ P  D  TPK  R  +
Sbjct: 47  RLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSV 103


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 631  KMYVPEEILPVYRDVLVPLADILTPKPIRSRID 729
            K Y+P     V+ DVL  L  IL+PK I +++D
Sbjct: 3756 KQYIPN----VWNDVLKKLITILSPKVIITKLD 3784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,676
Number of Sequences: 5004
Number of extensions: 73383
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)