Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A17
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.078
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.42 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.078
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +1

Query: 754 PPPPPPXXGXXXXXXXXXXXXXXVXXXXXXPXKKXXPPPPGGGXXXXXGXXPPPPPP 924
           PPPPPP                 +      P     PPPP        G  PPPPPP
Sbjct: 732 PPPPPPAV------IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 32.7 bits (71), Expect = 0.078
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 861 PPPPXGGXXXXGGXXPPPPPP 923
           PPPP  G    G   PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 861 PPPPXGGXXXXGGXXPPPPPP 923
           PPPP       G   PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 861 PPPPXGGXXXXGGXXPPPPPP 923
           PPPP        G  PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
 Frame = +2

Query: 632 PPPPPXKKXXRXXXXFFXXXXPPX---GGXXXXXXXXXXXXXXPPPPPPP 772
           PPPPP                PP    GG              PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 617 PXXXGPPPPP 646
           P   GPPPPP
Sbjct: 756 PIMGGPPPPP 765



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 752 PPPPPPPXXG 781
           PPPPPP   G
Sbjct: 763 PPPPPPGVAG 772


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 844 PXKKXXPPPPGGGXXXXXGXXPPPPPPXXXXKKSK 948
           P     PPPP  G        PPPPP     +K+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 23.8 bits (49), Expect(2) = 4.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 752 PPPPPPP 772
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.0 bits (42), Expect(2) = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 611 FXPXXXGPPPPP 646
           F P    PPPPP
Sbjct: 18  FEPPSQPPPPPP 29


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 870 PXGGXXXXGGXXPPPPPP 923
           P  G    GG  PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPP 312



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 871 PGGGXXXXXGXXPPPPPP 924
           P  G     G  PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPP 312


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.4 bits (48), Expect(2) = 2.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 907  PPPPPPXXXXKK 942
            PPPPPP    KK
Sbjct: 1097 PPPPPPAEVEKK 1108



 Score = 22.2 bits (45), Expect(2) = 2.9
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +1

Query: 844  PXKKXXPPPPGGGXXXXXGXXPPPPPP 924
            P     P  P           PPPPPP
Sbjct: 1074 PSNISKPSAPVANNVSKPSAVPPPPPP 1100


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = +2

Query: 752 PPPPPPPXXGXFFFFFXXXRGGGGSXXXXXXXPKXQXPPPXGGXXXXXXXXPPPPPPP 925
           PPPPPPP                         P  + PP            PPPPPPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSP--EIPPTYTPKQADPLPAPPPPPPP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
 Frame = +2

Query: 752 PPPPPPPXXGXFFFFFXXXRGGGGSXXXXXXXPKXQXPPPXGGXXXXXXXXP-----PPP 916
           PPPPPPP             G G S       P    PPP           P     PPP
Sbjct: 311 PPPPPPPSRRN---RGKPPIGNGSSNSSLPPPP----PPPRSNAAGSIPLPPQGRSAPPP 363

Query: 917 PPP 925
           PPP
Sbjct: 364 PPP 366



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 844 PXKKXXPPPPGGGXXXXXGXXPPPPPP 924
           P ++    PP G         PPPPPP
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 905 PPPPPPPXXKXKNPK 949
           PPPPPPP     +PK
Sbjct: 371 PPPPPPPELLNHSPK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,932
Number of Sequences: 5004
Number of extensions: 27251
Number of successful extensions: 342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)