Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A17
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 752  PPPPPPPXXG 781
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 752  PPPPPPP 772
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 905  PPPPPPP 925
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 905  PPPPPPP 925
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 742  GGXXPPPPPP 771
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 894  GGXXPPPPPP 923
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect(2) = 1.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 908  PPPPPPXXKXKN 943
            PPPPPP    +N
Sbjct: 1859 PPPPPPRNHDQN 1870



 Score = 20.6 bits (41), Expect(2) = 1.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 905  PPPPPPP 925
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 752 PPPPPPPXXG 781
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 752 PPPPPPPXXGXFFFF 796
           P PPPPP  G  + F
Sbjct: 374 PLPPPPPIRGGEWTF 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,565
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)