Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A16
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    31   1.2  
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280...    29   3.7  

>09_01_0175 -
           2509014-2509064,2509389-2509490,2509603-2509729,
           2509852-2511564,2512335-2512424,2512533-2512801,
           2513118-2513687,2513703-2514065
          Length = 1094

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -1

Query: 402 AHYLCIKMCPKSDXXXXXXXXXXRYVKDGVENYIKLLKSGLFARITTINIVPLFKPSWWW 223
           A  L  K  P +D           Y    +   ++LLK GL  R+  +N + ++K  W  
Sbjct: 37  ARVLKAKYYPHTDVLHSSAKDVISYSWRSILKGVELLKEGLIWRVGDVNSLKIWKDPWIP 96

Query: 222 TLELRRPLT 196
               R+P+T
Sbjct: 97  RSSTRKPIT 105


>01_06_0886 +
           32725504-32725824,32725905-32726658,32727911-32728033,
           32729477-32729535,32731427-32731732,32732006-32732236,
           32732332-32732484,32732567-32732836
          Length = 738

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 315 RHL*HNVISYGDAAVTGRFSDTFLYTDNVLPTSTLEIYIFRKSLYNF 455
           RH+ H+++   DAA T   S +FL +    P  T   Y+FR   + +
Sbjct: 423 RHI-HSLMPMRDAARTACLSHSFLCSWRCYPNLTFNKYVFRPKAFTY 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,795
Number of Sequences: 37544
Number of extensions: 247936
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)