Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A16
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    30   1.9  
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   2.5  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    28   10.0 
AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b prote...    28   10.0 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 369 FSDTFLYTDNVLPTSTLEIYIF-RKSLY-NFVRLASFVFFVKILIGNFIRRHSLI 527
           ++  F Y DNV+ TS   I  F  ++L+  F R+A+F F V ++I  FI + S I
Sbjct: 30  YNAQFKYADNVIKTSKYNIITFIPQNLFEQFQRIANFYFLV-LMILQFIPQISSI 83


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 348 DAAVTGRFSDTFLYTDNVLPTSTLEIYIFRKSLYNFVRLASFVFFVKILIGNFIRRH 518
           D  +T R     L   N    +  ++YIF K   NF+ L    F+ + L+G F+ R+
Sbjct: 79  DCRITCRNQKKLLQNSNFEEVAFNDLYIFLKHPMNFLCLEDDPFYEEQLLGAFLFRY 135


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 381 FLYTDNVLPTSTLEIYIFRKSLYNFVRLASFVFFVKILIGNFI 509
           ++Y   +         +  K  Y  V++A F FF+ I+IG+ I
Sbjct: 37  YIYVHKINKQREESFPLIMKQFYKMVKIAYFCFFMVIVIGSVI 79


>AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b protein
           protein 51 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 270 ITTINIVPLFKPSWWWTLELRRPLTAGHSLNLXPCMRQS 154
           +++   +  F P+ W TL+ R+PLT+   + L   M Q+
Sbjct: 443 LSSAEFMNAFLPTDWLTLQDRQPLTSSQLMTLSQAMLQN 481


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 208  PQLQSPPPARLEEWHDVYSRNSSEESRLQQLNII 309
            P+  +PPP+R   W  V S N+S  S L  LN +
Sbjct: 3761 PKADAPPPSRSLSWTTV-SSNASLNSLLDALNTV 3793


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,030
Number of Sequences: 27780
Number of extensions: 224282
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)