Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A12
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 35 0.074
07_01_1201 - 11419851-11419913,11420090-11420311 31 1.2
03_06_0149 - 31987183-31987630,31987813-31987874 30 2.1
12_02_1188 + 26801833-26802225 30 2.8
12_01_0816 + 7502669-7503145 29 4.9
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
10_08_0223 - 15986763-15987575 28 8.5
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 28 8.5
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 35.1 bits (77), Expect = 0.074
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 724 RKRHASRREKGGQVSGKRQGRNRRAHEGASQGETPG 617
R R RR GG+V+G+ R+RR GA +GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 541 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 687
L PP Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 730 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASQGETP 620
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_1188 + 26801833-26802225
Length = 130
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 694 GGQVSGKRQGRNRRAHEGASQGETPGIFIVLSG 596
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 821 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 690
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_08_0223 - 15986763-15987575
Length = 270
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 694 GGQVSGKRQGRNRRAHEGASQGETPGIFIVLSGFATSDLSVDFCDARQGGGA----YGKT 527
GG G G +GA + + I + S + D + + DA GGG +G
Sbjct: 146 GGSNGGSGYGAGAGVGQGAGESGS-SIAMAPSPSSGGDYNGGYADAAGGGGGGGGGHGGG 204
Query: 526 PATRPFYGSWPFAG 485
PA P YG AG
Sbjct: 205 PAASPSYGVGAGAG 218
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 28.3 bits (60), Expect = 8.5
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Frame = +2
Query: 353 PLPRSLT-RCARSFGC-GERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCW 526
P P++ R FGC + +R Y + QG E + P TVK+ +
Sbjct: 109 PSPKTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQGGDDEWRGSSFTRREPSTVKKSKTE 168
Query: 527 RFSIGSAPLTSITKIDAQVRGGETRQDYK-DTRRFPLGSSLVRSPVPTLPLTGYLSAFLP 703
R S S + KID DYK + +G RSP T+ L +L A P
Sbjct: 169 RSSRRSHERSRRGKIDLDAAEATVTLDYKIFVATWNVGG---RSPPNTMSLEDWLHAAPP 225
Query: 704 S 706
+
Sbjct: 226 A 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,955,443
Number of Sequences: 37544
Number of extensions: 545122
Number of successful extensions: 1665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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