Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A11
(1172 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1113 - 10292781-10293299 32 0.76
01_04_0139 - 16570515-16571141 31 1.3
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 31 2.3
10_08_0194 + 15645571-15645978 30 3.1
04_01_0360 - 4720997-4721812 30 3.1
01_02_0007 + 10132380-10133201 30 3.1
02_04_0021 + 18975992-18976408 30 4.1
07_03_1751 - 29215074-29216270 29 7.1
04_03_0904 + 20717005-20718087 29 7.1
01_01_0070 - 542603-542686,542803-543441 29 7.1
12_02_0299 - 17051570-17052474,17053542-17053755 29 9.4
>07_01_1113 - 10292781-10293299
Length = 172
Score = 32.3 bits (70), Expect = 0.76
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = -2
Query: 607 WXKGXDGXPRENEXXNWRRXXREXXXGGAEGXGXXXGXGKXQGXXGAGDTXGG 449
W G G P + R R GG +G G + QG G G G
Sbjct: 24 WCSGQTGPPADGAMRERRSGGRRRRGGGGDGDGDDDAGAREQGGGGDGGVGAG 76
>01_04_0139 - 16570515-16571141
Length = 208
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 559 WRRXXREXXXGGAEGXGXXXGXGKXQGXXGAGDTXGGVSA 440
WR E G G G G+ G G G+T GG SA
Sbjct: 40 WREGKAEARVGEETAEGEGKGEGESGGREGGGETDGGSSA 79
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +1
Query: 370 PSXPPGPXPXXI---PFPPPXCQRFXLRLHRL-XCPXPXDXLGXXPXLSXXPXPRPLLXX 537
P PP P P P PPP R R HR+ P P P S P P P L
Sbjct: 57 PPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPP 116
Query: 538 XPS 546
P+
Sbjct: 117 PPA 119
>10_08_0194 + 15645571-15645978
Length = 135
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 559 WRRXXREXXXGGAEGXGXXXGXGKXQGXXGAGDTXGGVSA 440
WR E G G G G+ G G G+T GG SA
Sbjct: 40 WRDGKAEARVGEETAEGEGKGEGESGGREGRGETDGGSSA 79
>04_01_0360 - 4720997-4721812
Length = 271
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 559 WRRXXREXXXGGAEGXGXXXGXGKXQGXXGAGDTXGGVSA 440
WR E G G G G+ G G G+T GG SA
Sbjct: 125 WREGKAEARVGEETVEGEGKGEGESGGREGGGETDGGSSA 164
>01_02_0007 + 10132380-10133201
Length = 273
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +1
Query: 361 LRXPSXPPGPXPXXIPFPPPXCQRFXL-RLHRLXCPXPXDXLGXXPXLSXXPXPRPLLXX 537
L P P P P +P P P Q L L P P P P P+PL
Sbjct: 73 LPQPQPQPQPQPQPLPQPQPQPQPLPLPGPQPLPQPGPQPNPNPQPLPQPNPNPQPLPQP 132
Query: 538 XPSXPVSNSXXRSPSXXRQXP 600
P+ P +P+ + P
Sbjct: 133 DPNAPPLPLPQPNPNNPQPLP 153
>02_04_0021 + 18975992-18976408
Length = 138
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 432 VXSALTPPXVSPAP*XPWXXPXP-XXXPXPSAPP 530
V ALTPP P P P P P P PS PP
Sbjct: 91 VRCALTPPPPKPKPTPPPPAPTPKPPAPSPSPPP 124
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 529 GGAEGXGXXXGXGKXQGXXGAGDTXGGVSADXTF 428
GG G G G GK G G G GG A F
Sbjct: 284 GGGAGAGGGFGGGKGGGFGGGGGGGGGAGAGGGF 317
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 447 TPPXVSPAP*XPWXXPXPXXXPXPSAP 527
TPP +P P P+ P P P P P
Sbjct: 333 TPPTYTPTPTPPYHKPPPSYTPGPPPP 359
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 444 LTPPXVSPAP*XPWXXPXPXXXPXPSAPP 530
+TPP V+P P P P P P+ PP
Sbjct: 95 VTPPPVTPPPVTPPPVSPPPATPPPALPP 123
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 450 PPXVSPAP*XPWXXPXPXXXPXPSAPP 530
PP P P PW P P P PP
Sbjct: 256 PPPAFPFPLPPWPWAPPPAFPFPHLPP 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,406,815
Number of Sequences: 37544
Number of extensions: 238277
Number of successful extensions: 1577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3584899172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -