Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A10
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.97 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 736 PPXXXGGGPPPGGXXXG-XGXSPXXPPPXSP 825
           PP    GGPPP     G  G  P  PPP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 464 PPPPXGGGGXXLGPXXXPPPXGPXPPXXXGGA 559
           PPPP G  G   GP   PPP  P P    GG+
Sbjct: 764 PPPPPGVAG--AGP---PPPPPPPPAVSAGGS 790



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 703 PPPPXKNXXKFPPXXXGGGPPPGGXXXGXGXSPXXPPPXSPXXXPPP 843
           PPPP       P       PPP     G    P  PPP      PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP--PPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 953 PPPPPRXRXXPGXXXXKXGPPPPXXXKXGXR 861
           PPPPP      G       PPPP     G R
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 464 PPPPXGGGGXXLGPXXXPPP 523
           PPPP   G    GP   PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 27/118 (22%), Positives = 28/118 (23%), Gaps = 1/118 (0%)
 Frame = +1

Query: 520 PXXPXAPXXXGGGXXXPPPGGGXXXXPKXGGXPXXXPFXPRXXPXAQTXXRXGXLVFFSH 699
           P  P  P    G    PP        P            P   P +              
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310

Query: 700 XPPPPXKNXXKFPPXXXGGGPPP-GGXXXGXGXSPXXPPPXSPXXXPPPXXXXGXRXP 870
            PPPP       PP     G PP G         P  PPP S      P    G   P
Sbjct: 311 PPPPP-------PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 31/136 (22%), Positives = 34/136 (25%), Gaps = 11/136 (8%)
 Frame = +1

Query: 469 PPXGGGGXXFGXXXXXPPXXPXA----PXXXGGGXXXPPP------GGGXXXXPKXGGXP 618
           PP G G          PP    A    P    G    PPP        G    P      
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384

Query: 619 XXXPFXPRXXPXAQTXXRXGXLVFFSHXPPPPXKNXXKFPPXXXGGGPPPGGXXXGXGXS 798
              P  P      ++      L   S    PP       PP      PP        G  
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444

Query: 799 PXXP-PPXSPXXXPPP 843
              P PP +P   P P
Sbjct: 445 AAPPLPPSAPIAPPLP 460


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 709  PPXKNXXKFPPXXXGGGPPPGGXXXGXGXSPXXPPPXSPXXXPPPXXXXGXR 864
            PP  +    PP      PPP       G  P  PPP  P    P     G R
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 797 PPXXPPPXXPXXXPPPG 847
           PP   PP  P   PPPG
Sbjct: 15  PPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.152    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,469
Number of Sequences: 5004
Number of extensions: 29485
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)