Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A09
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 180 3e-46
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 180 3e-46
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 6.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 180 bits (437), Expect = 3e-46
Identities = 89/186 (47%), Positives = 115/186 (61%)
Frame = +3
Query: 246 QDKNKYNTPKYRLXVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 425
Q KNKYN PKYRL VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 426 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 605
Y+TG E +++GP F+ +LDVGL RT+TG+R
Sbjct: 99 YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158
Query: 606 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKSMLKYTGLTSXGLHVAEYMRSLEQDDEDS 785
VFGAMKGA DGGL +PHS RFPG+D E+++ + G HVAEYM L DDE+
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218
Query: 786 FXRQFS 803
+ +QFS
Sbjct: 219 YQKQFS 224
Score = 62.9 bits (146), Expect = 6e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2
Query: 131 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 259
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 180 bits (437), Expect = 3e-46
Identities = 89/186 (47%), Positives = 115/186 (61%)
Frame = +3
Query: 246 QDKNKYNTPKYRLXVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 425
Q KNKYN PKYRL VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 426 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 605
Y+TG E +++GP F+ +LDVGL RT+TG+R
Sbjct: 99 YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158
Query: 606 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKSMLKYTGLTSXGLHVAEYMRSLEQDDEDS 785
VFGAMKGA DGGL +PHS RFPG+D E+++ + G HVAEYM L DDE+
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218
Query: 786 FXRQFS 803
+ +QFS
Sbjct: 219 YQKQFS 224
Score = 62.9 bits (146), Expect = 6e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2
Query: 131 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 259
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 462 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 370
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 4.8
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +3
Query: 69 IPFFLLGVLSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ 248
+PF+ +G + LR +IW SL+ T G SR + KL+ + N Q
Sbjct: 960 LPFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI---KLLYRVENPDVAQ 1016
Query: 249 -DKNKYNTPKYRLXVRLSNKDVTC--QVAYSRIEGDHI 353
+ + + +Y L S K C Y++ D I
Sbjct: 1017 LFEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEI 1054
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 69 IPFFLLGVLSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ 248
+PF+ +G S LR +IW SL+ T G SR + KL+ + N VQ
Sbjct: 984 LPFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI---KLLYRVENPEIVQ 1040
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 232 FTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTDRTPSKK 77
FT I+ PF + P VL NE H+LN+ Y + RTP ++
Sbjct: 166 FTVIVTFSPFKVEFQRDGEPQVVL------NERHLLNMEYYRPKSSRTPEQE 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,274
Number of Sequences: 5004
Number of extensions: 67248
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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