Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A04
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.22
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 1.5
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.5
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 28 1.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 2.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.7
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 27 4.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.6
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.1
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 8.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 8.1
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 26 8.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 8.1
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.1 bits (67), Expect = 0.22
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 451 NDQQFFFVNGQIISAVSIEEICRE--IDDIFKSIDRLASATSTLRNRKPDVVQCSISTGE 624
N+ +FVNG S ++ + +E ID K L ++ KP + G
Sbjct: 230 NNTSKYFVNGVESSFSAVSNLLKEKGIDLNHKRFLILQGEVESIAQMKPRAISEG-DDGL 288
Query: 625 LSFDDTIDQIDEEKIDQCIEEAFEELSGSSQVCA 726
L + + I I K IEE +ELS S +CA
Sbjct: 289 LEYLEDI--IGTSKYKPIIEENMQELSNSDDICA 320
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 475 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQI 654
+ QII A+ + + E+D I +S + S TS +R V+ C+ S G SF ++
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582
Query: 655 DE 660
++
Sbjct: 583 EK 584
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +1
Query: 370 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSID 549
RKV + L +K +ID N + + EA++Q + A+S +I + I++ +
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHK 169
Query: 550 RLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDE-EKIDQCI 681
R+ + + + +T ++ D DE EK ++C+
Sbjct: 170 RMRENIWAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 822 LWRRGPHLTVGLFNREXTLLTRVVTDSWLFHSG 724
+W RGP LT G NR+ D W F +G
Sbjct: 486 IWLRGPSLTRGYLNRDKENKESFTPDGW-FRTG 517
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 2.0
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Frame = +1
Query: 319 DLKKTTFDSAQLLKKVRRKV--ARQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 477
D +T D+ L+ K+ + A Q+S++ I D +++ + Q ++ + Q +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509
Query: 478 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGEL 627
G+ SA+++E DDI +DRL T+ N+ D + S E+
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSISEI 561
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +1
Query: 388 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 567
L+D ++ DY + N NN N QQ V+ + V + + + S+ +S+
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265
Query: 568 STLRNRK-PDVVQCSISTGELSFDDTIDQIDEEKIDQCI 681
N + P + ++ +G ++FD+ + + + Q +
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAM 304
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 640 TIDQIDEEKIDQCIEEAFEELSGSSQVCARMKQPGISDDSSQKGXFSIEQSDS*VRXSTP 819
T+D I + I + F LSG + RM G S + ++G +EQ D+ VR +
Sbjct: 415 TLDTIVNQLI-RYYYRGFRHLSGMTMGMRRMFTQGGSYSAQERGLCRLEQKDTVVRYAQS 473
Query: 820 KAV 828
A+
Sbjct: 474 AAL 476
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 640 TIDQIDEEKIDQCIEEAFEELSGSSQVCARMKQPGISDDSSQKGXFSIEQSDS*VRXSTP 819
T+D I + I + F LSG + RM G S + ++G +EQ D+ VR +
Sbjct: 415 TLDTIVNQLI-RYYYRGFRHLSGMTMGMRRMFTQGGSYSAQERGLCRLEQKDTVVRYAQS 473
Query: 820 KAV 828
A+
Sbjct: 474 AAL 476
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 202 LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV- 378
+L+N+ + KL + VD D TE+ + +L++ L + +L+K R +
Sbjct: 92 ILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILEKYLRFLN 151
Query: 379 --ARQLSDKSII 408
++LSDK +
Sbjct: 152 PDLQELSDKKAV 163
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 322 LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 438
LK+T +LLKK+ + + + SI+ Y +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 637 DTIDQIDEEKIDQCIEEAFEELSGSSQVCARMKQPGIS 750
DT+ +I+++ I EE+ SS + A QPGIS
Sbjct: 135 DTLVRINDQLSRNHISGTTEEMQSSSSLIAGEVQPGIS 172
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 199 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 297
++ N +E WK D+DED+ + EP +
Sbjct: 42 VVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKL 74
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 547 DRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDEEKIDQCIE 684
++L S+ T R++ ++ + EL D+ID I EKID C E
Sbjct: 288 EKLLSSLETERSKLSSLL-LKMQEKELEGSDSIDPILLEKIDVCEE 332
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 499 SIEEICREIDDIFKSIDRLASATSTLR-NRKPDVVQCSISTGELSFDDTIDQIDEEKIDQ 675
S+ R + + KS++ A A T + R+ ++++ + + DD +++ DEE+ D+
Sbjct: 105 SMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADE 164
Query: 676 CIEEAFEEL 702
+ + +E+
Sbjct: 165 LVNKVLDEI 173
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 313 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 477
ALD KK + LLK+++ K K +++ R ++ A D ++ +
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674
Query: 478 GQIISAVSIEEICREIDDIFK 540
G+ +S I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,240
Number of Sequences: 5004
Number of extensions: 50898
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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