Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A03
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 81 2e-16
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.38
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.5
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.7
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.6
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 26 6.2
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 6.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.2
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 81.0 bits (191), Expect = 2e-16
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Frame = +3
Query: 507 GLIWKKGYDKGDIKGHVYDDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGDL 683
G IWKKGY+ ++ H++ DV+PA++ RS++ G ++YIYSSGSV AQKL F S AG+L
Sbjct: 77 GRIWKKGYESNELTSHLFPDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNL 134
Query: 684 LPLIDGHFDTAVRC*T--GSY 740
L G++DT + T GSY
Sbjct: 135 LKYFSGYYDTTIGLKTECGSY 155
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 200 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-EEDVKEAVNALRKLAIEDQEK 376
K LLLDIEGT SISFVKDKLFPYA + +++ ++ +E+++E + I ++
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62
Query: 377 SVEG 388
EG
Sbjct: 63 HAEG 66
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 266 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 382
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -1
Query: 301 IKKIFHIFFSIRK*FVLNKADRCCSSFNIKKQNFAFLNNIADYKYXLLPFRQDPHQLCRN 122
++ + + S +K +NK+ C SF+ F NN + ++Y R D +C N
Sbjct: 571 VRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFEYEKESKRSDIVCICTN 630
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 194 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 373
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 374 KSV 382
+
Sbjct: 242 DEI 244
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 278 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 427
EN L Q+D+ E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 540 DIKGHVYDDVLPALEQWRSVEGQKIYI 620
D G+VY+D + L++ + G KIYI
Sbjct: 118 DEDGYVYEDTMKHLDKITEITGAKIYI 144
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 413 HPLQEW*PVLQHSSPD 366
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 411 MLLKRIKSRVWLRMSNGRCRQTVKLPP*SNSXGLIWKKGYDKGDIKGHVYDDVLPALEQW 590
++ R S+V+ R +C + K+ N + W K Y K K VYD L
Sbjct: 19 IMFVRNDSKVF-RFCRSKCHKNFKMK--RNPRKVAWTKAYRKAHGKEMVYDTALAVTAAR 75
Query: 591 RSV 599
R+V
Sbjct: 76 RNV 78
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 703 ISTLLLGAKQEATSYTAIVEKIGCKPEEILFLTDI 807
IS L L KQ+ T+ T + K +LF TDI
Sbjct: 310 ISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 275 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 379
EEN + L A DEEDV+ A A ++ A+E E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,316
Number of Sequences: 5004
Number of extensions: 70175
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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