Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A03
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 98 9e-21
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 81 2e-15
06_01_0608 - 4399252-4399894,4401640-4402427 33 0.40
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 32 0.70
12_01_0468 + 3661177-3661626 30 2.8
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 6.5
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 97.9 bits (233), Expect = 9e-21
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = +2
Query: 191 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIED 367
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE + LR ED
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEED 332
Query: 368 QEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 505
+ + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQ
Sbjct: 333 LKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQ 378
Score = 75.8 bits (178), Expect = 4e-14
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +3
Query: 507 GLIWKKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLL 686
G IW+ G++ +++G V+DDV AL+ W + G K+YIYSSGS +AQ+LLFG ++ GDL
Sbjct: 379 GHIWRTGFESKELQGVVFDDVPEALKHWHA-SGMKVYIYSSGSREAQRLLFGNTAYGDLR 437
Query: 687 PLIDGHFDT 713
+ G FDT
Sbjct: 438 QYLCGFFDT 446
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 80.6 bits (190), Expect = 2e-15
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 206 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQW-DEEDVKEAVNALRKLAIEDQEKSV 382
++LDIEGTTT ISFV D LFPYA +NV+ L A + E+ + V LR ED + V
Sbjct: 907 VVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGV 966
Query: 383 EGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQLQ 505
+G V +P DA E + +E L NV+ + +DRKV LKQLQ
Sbjct: 967 DGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQ 1009
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +3
Query: 507 GLIWKKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSA-GDL 683
G IW++G+D G+++ VYDD AL +WR+ K YIYSSGS +AQ+L+F ++A GDL
Sbjct: 1010 GRIWRRGFDSGELRSEVYDDAADALRRWRA----KAYIYSSGSREAQRLIFANTAAHGDL 1065
Query: 684 LPLIDGHFDTAV 719
+ G FDT +
Sbjct: 1066 RDHLCGFFDTTI 1077
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 718 LGAKQEATSYTAIVEKIGC-KPEEILFLTDI 807
+GAK+E +SY I + +G +P +ILFLTD+
Sbjct: 1077 IGAKREVSSYYEIWQTLGTDRPSQILFLTDV 1107
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 266 PYAEENVKDFLDAQWDEEDVKEAVNA---LRKLAIEDQEKSVEGLVT 397
PY E++++ LD + DEEDV+ + +A L K+ +E + L+T
Sbjct: 371 PYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLIT 417
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 152 KWQKXILVIGDIVKKSKVLLLDIEGTT---TSISFVKDKLFPYAEE-NVKDFLD-AQWDE 316
+W + +G++ + K+ L + T + D +FPY EE + + QW E
Sbjct: 1026 RWLSVLPPLGELPRLKKLSLFGLSSITHINDQVYGTNDVIFPYLEELHFSELFSWEQWSE 1085
Query: 317 EDVKEAVNALRKLAI 361
+ K + LRKL I
Sbjct: 1086 AEYKLLIPHLRKLGI 1100
>12_01_0468 + 3661177-3661626
Length = 149
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 161 KXILVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVN 340
K +L DIV K L ++ S +++ EE V++ D + +EE V+E
Sbjct: 35 KSLLDAQDIVMSEKFACLSLDEQLHSDEEEEEE--EEEEEEVEEEEDIE-EEEVVEEEEE 91
Query: 341 ALRKLAIEDQEKSVEGLVTIPGEDASKEDQ-IEGLVKNV 454
+ + ++++E+ + V GE+ ++E Q +G+V+++
Sbjct: 92 EIEEEEVKEEEEELREQVQEAGEEVNEEQQGADGVVQSM 130
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 179 GDIVKKSKVLLLDIEGTTTSISFVKD--KLFPYAEENVKDFLDAQWDEEDVKEAVNALRK 352
G I ++ K L++D +F +D ++F N + L + E VKE K
Sbjct: 238 GFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNRQTVLFSATQTEQVKE----FAK 293
Query: 353 LAIEDQEKSVEGLVTIPGEDASKEDQIEGL 442
L+ E E+S V + +DA +EGL
Sbjct: 294 LSFEKNEESTSKPVYVGVDDAETNATVEGL 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,099,513
Number of Sequences: 37544
Number of extensions: 469783
Number of successful extensions: 1122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -