Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A03
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical pr... 89 5e-18
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 32 0.48
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 30 2.5
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 30 2.5
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 29 3.4
U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 29 4.4
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 4.4
Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 28 7.8
U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated p... 28 7.8
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 28 7.8
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 28 7.8
>Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical
protein F58H1.3a protein.
Length = 492
Score = 88.6 bits (210), Expect = 5e-18
Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Frame = +3
Query: 480 KLPP*SNSXGLIWKKGYDKGDIKGHVYDDVLPALEQWRSVEGQK--IYIYSSGSVQAQKL 653
KL P GLIW++ Y +GD+KGHVY DVLP L + VE +K IYIYSSGSV AQKL
Sbjct: 98 KLTPMKALQGLIWEEAYQRGDVKGHVYPDVLPVL---KIVENRKIPIYIYSSGSVHAQKL 154
Query: 654 LFGQSSAGDLLPLIDGHFDTAV 719
LF S GD+ ++ G+FDT +
Sbjct: 155 LFANSIEGDMTKILYGYFDTNI 176
Score = 79.4 bits (187), Expect = 3e-15
Identities = 46/106 (43%), Positives = 65/106 (61%)
Frame = +2
Query: 206 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVE 385
LLLDIEGT TSISFVKD+LFPYA ENV ++L+ +D + V LR +A + E V
Sbjct: 11 LLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHIADQQAENDV- 69
Query: 386 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQXAYLEK 523
+V I +++ IE + KNV+ + D+K+ P+K LQ E+
Sbjct: 70 AVVRI---REPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIWEE 112
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 718 LGAKQEATSYTAIVEKIGCKPEEILFLTDIE 810
+G K E+ SYT I E+I P EILFLTD+E
Sbjct: 176 IGLKGESNSYTKISERIKIPPSEILFLTDVE 206
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 365 DQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQ 499
D EK + +D +ED+++ + ++ Q SSD+KV+ K+
Sbjct: 100 DDEKPASSSSKLAADDDDEEDELDAFMAGIEKQASSDKKVSEQKE 144
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 179 GDIVKKSKV--LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRK 352
G I++KSK+ L+ I TT VKD L YA++ V +D +E V +
Sbjct: 226 GSIMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNRE-VKKIES 284
Query: 353 LAIEDQEKSVEGLVTIP 403
IE K+V + +P
Sbjct: 285 RDIEFILKNVYNMPVVP 301
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 621 YSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVRC 725
YS+G V +K + GQ S+ D PL+ G V C
Sbjct: 78 YSTGQVTTRKSVLGQVSSADQFPLLYGALAPEVFC 112
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 278 ENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEK----SVEGLVTIP 403
+NVK LD W EE++ AV A + ED+E+ EG+ +P
Sbjct: 377 KNVKVHLDDDWHEEELVGAVGAEEEEDEEDEEEEDEDEEEGMADVP 422
>U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical protein
T27A3.2 protein.
Length = 789
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +2
Query: 167 ILVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNAL 346
I+ +G ++K L + ++ ++ + E+ L + E V E+ A
Sbjct: 665 IVEMGFSNHQAKYALKQVPTVAEAVEWLFANMDSIPVESAAVGLSSDAPEPSVTES--AT 722
Query: 347 RKLAIEDQEK-SVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVA----PLKQLQXA 511
+K + EK + G+++ G + ++K KW + +D KVA P K+L
Sbjct: 723 QKTFKDGGEKYKLIGMISHMGSRPDSGHYVAHMLKEGKWVLFNDEKVALSQDPPKKLAYV 782
Query: 512 YLEKRL 529
YL KR+
Sbjct: 783 YLYKRI 788
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 KKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQ 370
K ++ D+ G + + + K P EE+ DFL QW + + +ED+
Sbjct: 386 KLRNMITADMTGNISRV-LTRKKPAPKLEES--DFLRGQWTTSTIASNQRKRKVATLEDE 442
Query: 371 EKSVEGLVTIPGEDASKEDQI--EGLVKNVKWQMS 469
E+ V +++ P K E V W S
Sbjct: 443 EEDVFNMLSSPNLSQRKRKATLQENTPSGVGWTAS 477
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 269 YAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE-DQIEGLV 445
++EE + ++Q E +K +RK+ IED EK ++ + + A+ E + +
Sbjct: 382 FSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEIQEFHDKI 441
Query: 446 KNVKW--QMSSDRK 481
K ++ Q+SS+ K
Sbjct: 442 KQLELEVQLSSENK 455
>Z83111-2|CAB05533.2| 331|Caenorhabditis elegans Hypothetical
protein F57G8.3 protein.
Length = 331
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 646 RNFFLASHLLGTYFLSSMAISTLLLGAKQEATSYTAIVEKIGCKPEEILFLT 801
++F + +G Y + + IS + I E+I C PEEIL T
Sbjct: 133 KSFSRKCYAIGHYMFAMLFISPCYFNIPDQEIEKLTINERIPCLPEEILSRT 184
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 212 LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGL 391
+D G T + + + ++ DFL +WDE +E++N + L EK + G+
Sbjct: 261 VDEHGVTPEEMIINTEWGAFGDDGALDFLRTEWDEVVDRESINPGQHL----YEKMISGM 316
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 212 LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGL 391
+D G T + + + ++ DFL +WDE +E++N + L EK + G+
Sbjct: 266 VDEHGVTPEEMIINTEWGAFGDDGALDFLRTEWDEVVDRESINPGQHL----YEKMISGM 321
>U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated
protein 83, isoform b protein.
Length = 975
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 275 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 454
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 201 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 260
Query: 455 KWQ 463
KW+
Sbjct: 261 KWE 263
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 275 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 454
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 455 KWQ 463
KW+
Sbjct: 327 KWE 329
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 275 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 454
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 455 KWQ 463
KW+
Sbjct: 327 KWE 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,525
Number of Sequences: 27780
Number of extensions: 400198
Number of successful extensions: 1094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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