Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A02
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    29   0.90 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    26   6.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   8.4  

>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 308 SGKHWNTDNWIFLLSYCDSSQLADGAAVAIVFKNVVALKQILATGRCNVHIPTSLTGKTL 487
           SGK    D WI  LS C+     D   +  + K V++++  + + RC V +   + G+  
Sbjct: 4   SGKIGEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFH 63

Query: 488 D 490
           D
Sbjct: 64  D 64


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 316 LSRKYSKL*RRSTLFHSINEDLHQIE*TILPQQTIHVEQ 200
           L++ +S+    STLF  ++E +HQ + ++ P+Q I +++
Sbjct: 492 LTKLHSQQYNESTLFQYLSEFVHQRQKSLTPKQRIAIQE 530


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 618 NKITRAVSIQRGRDASVSLQRSSTNTNNAVPNSPXNILXQEPTLNTI 758
           N++ +      GR++SVS   SS   N+  P S   ++ +E T N +
Sbjct: 668 NQLRKQQPSNHGRNSSVSRSSSSVEVNSKHPGSDDMLIDKEYTRNIL 714


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 NXXGGWPIRLAARHGLFAVVKLFIQFGADPHL 264
           N  G   +  AA +G   + KL ++ G DPH+
Sbjct: 68  NESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 306 NTASCNVEAPCSTQ*MRICTKLNKQFYHSKQSMSSSQPYWPPTXXV 169
           +  S N + P +T+      K N Q Y + ++ +++QP  PP   V
Sbjct: 471 SVTSQNGQQPINTKLSANAAKTNYQSYLTNKARNATQPTQPPVSQV 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,619
Number of Sequences: 5004
Number of extensions: 60159
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)