Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_A02
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 33 0.37
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 31 0.85
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 31 0.85
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 31 1.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 31 1.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 31 1.5
U52001-2|AAK68379.1| 104|Caenorhabditis elegans Feminization of... 31 1.5
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 31 1.5
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 31 1.5
AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine re... 30 2.0
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF024491-2|AAT92081.1| 765|Caenorhabditis elegans Hypothetical ... 29 3.4
AF024491-1|AAB70312.2| 850|Caenorhabditis elegans Hypothetical ... 29 3.4
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 29 4.5
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 HAXLXGLIXFLRSGLNPNXXGGWP-IRLAARHGLFAVVKLFIQFGADP 258
H + L+ S +N GW + A R G +VVKLFI ADP
Sbjct: 1238 HYEMVSLLIAQGSNINVMDQNGWTGLHFATRAGHLSVVKLFIDSSADP 1285
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 178 GGWPIRLAARHGLFAVVKLFIQFGADPHLLSGTGCFYVTACCIFWKALEY 327
G +P+ AA G + L IQFGA+P+L G + C I + + Y
Sbjct: 228 GEYPLAFAACFGNKDIYDLLIQFGANPNLQDSFGNTILHMCVINYSSSMY 277
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 178 GGWPIRLAARHGLFAVVKLFIQFGADPHLLSGTGCFYVTACCIFWKALEY 327
G +P+ AA G + L IQFGA+P+L G + C I + + Y
Sbjct: 228 GEYPLAFAACFGNKDIYDLLIQFGANPNLQDSFGNTILHMCVINYSSSMY 277
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGAD 255
NP+ G P+ LAAR+G A++K+ I+ G D
Sbjct: 490 NPDT-GDTPLSLAARNGYIAIMKMLIEKGGD 519
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGAD 255
NP+ G P+ LAAR+G A++K+ I+ G D
Sbjct: 490 NPDT-GDTPLSLAARNGYIAIMKMLIEKGGD 519
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGAD 255
NP+ G P+ LAAR+G A++K+ I+ G D
Sbjct: 490 NPDT-GDTPLSLAARNGYIAIMKMLIEKGGD 519
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGAD 255
NP+ G P+ LAAR+G A++K+ I+ G D
Sbjct: 490 NPDT-GDTPLSLAARNGYIAIMKMLIEKGGD 519
>U52001-2|AAK68379.1| 104|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform b protein.
Length = 104
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGADP 258
N + G +P+ +AAR+G VV+ ++ GADP
Sbjct: 43 NSDQDGRYPLVIAARNGHANVVEYLLEIGADP 74
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGADP 258
N + G +P+ +AAR+G VV+ ++ GADP
Sbjct: 43 NSDQDGRYPLVIAARNGHANVVEYLLEIGADP 74
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 163 NPNXXGGWPIRLAARHGLFAVVKLFIQFGADP 258
N + G +P+ +AAR+G VV+ ++ GADP
Sbjct: 43 NSDQDGRYPLVIAARNGHANVVEYLLEIGADP 74
>AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine
receptor, class sx protein7 protein.
Length = 274
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +3
Query: 201 CSTWIVCCGKIVYSIWCRSSFIEWNRVLLRYSLLYFLESTGIL--IIGYFYFHIVILHN 371
C TW+ G +V + F+ W L Y +YF T L + Y ++L N
Sbjct: 120 CDTWMYLSGALVVPSIVGAIFVSWGFTNLDYEEIYFCSPTSSLHTVASKNYTRCIVLTN 178
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 419 LKQILATGRCNVHIPTSLTGKTLDQLAKGYKVSNWLEAPGSSHFPEN 559
++ IL TGR + + TGKT L K + + W+E F EN
Sbjct: 661 IEAILGTGRPSNKVEPIETGKTTPILEKKLEGNGWIEEVKEEKFDEN 707
>AF024491-2|AAT92081.1| 765|Caenorhabditis elegans Hypothetical
protein C24A1.3b protein.
Length = 765
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 187 PIRLAARHGLFAVVKLFIQFGADPHLLSGTG 279
PI LAA GL ++ KL ++ ADP L G
Sbjct: 219 PIHLAAAKGLTSITKLLLEAKADPLLADDEG 249
>AF024491-1|AAB70312.2| 850|Caenorhabditis elegans Hypothetical
protein C24A1.3a protein.
Length = 850
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 187 PIRLAARHGLFAVVKLFIQFGADPHLLSGTG 279
PI LAA GL ++ KL ++ ADP L G
Sbjct: 219 PIHLAAAKGLTSITKLLLEAKADPLLADDEG 249
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 384 APSASCEESQYESKNIQLSVFQCFPENTASC 292
+PS SC + Q +++N+Q+ QC P SC
Sbjct: 60 SPSCSCAQPQ-QTQNVQVQTTQCAPACQQSC 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,230
Number of Sequences: 27780
Number of extensions: 336792
Number of successful extensions: 980
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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