Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A01
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   4.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   4.6  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   6.1  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   6.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   8.1  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 305 HIDQVPSEYLSHKEKYELAIKKASLMFKLLR 397
           H D V  EYL HKE Y     + S   K++R
Sbjct: 601 HPDLVTREYLLHKEDYNYGDPEKSGKLKVIR 631


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 299  GIHIDQVPSEYLSHKEKYELAIKKASLMFKLLRKWQE 409
            G+ ++Q   +YL+ KEK++ A    + + +LL+  +E
Sbjct: 934  GVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEE 970


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 417 FSSSCHFLSNLNINDAFLIASSYFSLWL 334
           FSSSC +  NL+  D  + +S  +SL+L
Sbjct: 75  FSSSCSYSENLHDGDGNVNSSPVYSLFL 102


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +2

Query: 335 SHKEKYELAIKKASLMFKLLRKWQEEE 415
           + ++K+ LA+K+ S +FK+   W +++
Sbjct: 504 ARQKKFALALKRFSTVFKIFDTWADDQ 530


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 652 VVSRPRTKVPVTQFCLCISSNDVYIECSSYP 560
           ++  PRT  P + F  C+S+ +  I C   P
Sbjct: 13  ILPSPRTSSPSSNFKTCVSNENGCINCRCSP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,349
Number of Sequences: 5004
Number of extensions: 66130
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)