Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_A01
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    79   3e-15
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    38   0.011
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478...    31   0.91 
03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479     29   4.9  
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           28   8.5  

>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
 Frame = +2

Query: 497 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGYFRPWS*DNSNIRPPRL 676
           LH+ MF+P + GQGT EQQ  W+  A+   IIG YAQTELGHG       + +    P+ 
Sbjct: 106 LHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHG-SNVQGLETTATFDPKT 164

Query: 677 KEFVLHSPSFNCI*MVARRIGSPGXYGIVMAXLXPPGNARD-PAFIVQXRXEXTHMPL 847
            EFV+HSP+          +G    + +V A L   G       FIVQ R    H PL
Sbjct: 165 DEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQLRSLEDHSPL 222


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
 Frame = +2

Query: 434 YRAVLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTE 613
           Y AV+  A G A +  G  L + Y ++  +++  GT + +  +     N+D  G +A TE
Sbjct: 135 YFAVMEAA-GGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTE 193

Query: 614 LGHGYFRPWS*DNSNIRPPRLKEFVLHSPSFNCI*MVARRIGSPGXYGIVMAXLXPP--G 787
           L HG     +   +    P   EF++++P+   I          G +  V A L  P  G
Sbjct: 194 LHHG-SNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFATVFARLILPLQG 252

Query: 788 NARDPA 805
              DPA
Sbjct: 253 KGGDPA 258


>06_02_0320 -
           14347195-14347443,14347573-14347674,14347747-14347851,
           14347938-14348084,14348171-14348290,14348743-14348878,
           14349198-14349328,14350854-14350928,14351040-14351139,
           14351213-14351385,14351474-14351581,14351674-14351791,
           14353477-14353970
          Length = 685

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +2

Query: 497 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGYFRPWS*DNSNIRPPRL 676
           +H+ ++   +   GT      W+    N  I G ++ TELGHG       +       + 
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHG-SNVRGIETVATYDIKT 218

Query: 677 KEFVLHSPSFNCI*MVARRIGSPGXYGIVMAXLXPPG-NARDPAFIVQXRXE 829
           +EFV+++P  +          +   + IV A L   G N    AF+ Q R E
Sbjct: 219 REFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRDE 270


>03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479
          Length = 180

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +1

Query: 445 ARWCSWI-SNPR----RWLSSHPALCDVYTNIDGARNSRTTSILD 564
           ARW SWI  NP     + +++    CD +  +DG  NS    +L+
Sbjct: 43  ARWISWIPDNPGCRYFKCVNARSGCCDYFAWVDGPSNSFVREVLN 87


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 207 VHLLLSFIKSAFIFVLVMIITNY 139
           VH+L+  I  AF+FV+V I T Y
Sbjct: 660 VHILIFLIVGAFVFVIVCIATCY 682


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,016,982
Number of Sequences: 37544
Number of extensions: 453494
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)