Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P24
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    54   4e-08
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   2.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +2

Query: 113 NDAGEFVDLYCPRKCSASNRLIHAKDHAS 199
           N+AG+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 3   NEAGQLVDLYVPRKCSATNRIIQAKDHAS 31



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 204 QLVIADVDPATGRAADTSKM-YVVCGAIRRMGESDDCIVRLTKKDGIL 344
           Q+ +  VD A GR     K  Y + G +R  GESDDCI RLT +DG+L
Sbjct: 33  QINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 192 WSLAWMRRLLAEHFLGQYKSTNSPASFMHFIXTSTRYTGIDKMRK 58
           W +A+   L+ +  LG+ +ST    S +  + T  R  GIDK+ +
Sbjct: 195 WPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLGIDKLNQ 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,795
Number of Sequences: 5004
Number of extensions: 37253
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)