Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P24
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     51   2e-06
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    49   5e-06
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     31   1.8  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +2

Query: 113 NDAGEFVDLYCPRKCSASNRLIHAKDHAS 199
           N+ G+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 3   NEEGQMVDLYVPRKCSATNRIITAKDHAS 31


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 113 NDAGEFVDLYCPRKCSASNRLIHAKDHAS 199
           N+ G+ VDLY PRKCS +NR+I AKDHAS
Sbjct: 3   NEEGQMVDLYVPRKCSTTNRIITAKDHAS 31


>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 174 RRLLAEHFLGQYKSTNSPASFMHFIXTSTRYTGIDKM 64
           RRL  EHF   YK TN    FM +  T    + ++K+
Sbjct: 574 RRLSLEHFASSYKKTNRRLIFMDYDGTLVPQSSVNKV 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,894,139
Number of Sequences: 37544
Number of extensions: 281783
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)