Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P24
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    61   1e-09
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere...    29   4.9  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +3

Query: 204 QLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 353
           Q+   DVDP TGR     S  Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 33  QIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +2

Query: 113 NDAGEFVDLYCPRKCSASNRLIHAKDHAS 199
           NDAG+ V+LY PRKCS+SNR+I  KDHAS
Sbjct: 3   NDAGQTVELYVPRKCSSSNRIIGPKDHAS 31


>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical protein
            K08H10.7 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 171  RLLAEHFLGQYKSTNSPASFMHFIXTSTRYTGI 73
            R   EH++G Y    +     HF+ T+ +Y G+
Sbjct: 985  RTYKEHYIGDYAQPRTRHEMEHFLQTNVKYPGM 1017


>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
            promoting factorRDE-1 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 171  RLLAEHFLGQYKSTNSPASFMHFIXTSTRYTGI 73
            R   EH++G Y    +     HF+ T+ +Y G+
Sbjct: 985  RTYKEHYIGDYAQPRTRHEMEHFLQTNVKYPGM 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,714
Number of Sequences: 27780
Number of extensions: 233061
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)