Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P21
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    32   0.14 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   2.2  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 540 APPDEHHKNRRSSQRWRNPTGLXKIPXVXPWKAPSXPPS 656
           +PP+ H + R+S  + ++ T + K P   P+   S PPS
Sbjct: 246 SPPNAHSRRRKSQGKDQSNTPVIKAPAPIPFSVSSDPPS 284


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 540 APPDEHHKNRRSSQRWRNPTGLXKIPXVXPW 632
           +P   HHK+  + +R  +PT +  IP   PW
Sbjct: 441 SPKSLHHKSSSAGERPVSPTFVADIPPKTPW 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,194
Number of Sequences: 5004
Number of extensions: 43695
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)