Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P21
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    30   3.1  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   5.4  
06_01_0500 + 3584743-3585516                                           29   7.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.5  
02_01_0288 + 1932171-1932188,1932264-1933280                           28   9.5  

>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
            13537577-13537649,13537876-13538265,13538337-13538404,
            13539334-13539375,13540211-13540735,13540817-13540974,
            13541078-13541636,13542438-13542500,13542579-13542680,
            13542779-13543096,13543175-13543267,13543489-13543590,
            13543678-13543782,13544190-13544323,13545097-13545280,
            13545701-13545832,13546215-13546327,13546468-13546558,
            13547138-13549339
          Length = 1889

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 792  PXXGLXXTKPPRFNPEPXGPLSXXTIXL*XPXPGKKPNLSP 914
            P   L    PP FNP P   LS   + +  P PG  P ++P
Sbjct: 1587 PNKKLSAAAPP-FNPSPPAILSPLAVSVGLPPPGAIPGVAP 1626


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 369 RCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCWRFXIGSAPP 548
           R +RS     R+  ++ R     +++  T+ R   +  S+ PG  +R        GSA P
Sbjct: 606 RYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGSGSALP 665

Query: 549 DEHHKNRR 572
           D  H  R+
Sbjct: 666 DSGHGERK 673


>06_01_0500 + 3584743-3585516
          Length = 257

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 KRPGTVKRPRCWRFXIGSAPPDEHHKNRRSSQR 584
           K+PG+ K P      I S PPD H + R + +R
Sbjct: 5   KKPGSKKMPTPAVMRIRSPPPDPHRRARAAPRR 37


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>02_01_0288 + 1932171-1932188,1932264-1933280
          Length = 344

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 537 SAPPDEHHKNRRSSQRWRNPTGLXKIPXVXPWKAPS 644
           S+P  E  +   ++ RWR P G   +  V  W+ P+
Sbjct: 233 SSPRREFLRGITAAARWRQPGGARGVAAVAAWRVPA 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,915
Number of Sequences: 37544
Number of extensions: 355038
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)