Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_P18
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 33 0.41
03_02_0485 - 8808139-8808618 32 0.54
03_02_0484 + 8805053-8805538 32 0.72
03_02_0483 - 8804021-8804485 32 0.72
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 32 0.72
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.95
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 31 1.3
01_01_0229 - 1943473-1943922 31 1.7
01_01_0231 + 1951047-1951499 30 2.2
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 29 5.1
07_01_1127 + 10456895-10457388,10457488-10458112 29 5.1
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 6.7
09_03_0036 + 11772940-11773171,11774995-11775104 29 6.7
04_01_0252 - 3329712-3331061 29 6.7
03_01_0491 + 3720842-3720958,3721904-3723109 28 8.8
>03_02_0478 + 8775892-8776377
Length = 161
Score = 32.7 bits (71), Expect = 0.41
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 518 SVESRLSS 541
+++ + +
Sbjct: 130 QIKASMEN 137
>03_02_0485 - 8808139-8808618
Length = 159
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 518 SVESRLSS 541
+++ + +
Sbjct: 128 QIKASMEN 135
>03_02_0484 + 8805053-8805538
Length = 161
Score = 31.9 bits (69), Expect = 0.72
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 518 SVESRLSS 541
+++ + +
Sbjct: 130 QIKASMEN 137
>03_02_0483 - 8804021-8804485
Length = 154
Score = 31.9 bits (69), Expect = 0.72
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 518 SVESRLSS 541
+++ + +
Sbjct: 123 QIKASMEN 130
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = +2
Query: 281 PWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ-- 454
P R LA + + D + ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 455 ----HGYISRQ----FTRRYALPEGCTAESVESRLSS 541
G+ + + R ALP+ C V + L +
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKN 218
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.95
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 437 RVCLQPRCSRPPF*QRFLPGRNAGR 363
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 518 SVESRLSS 541
V++ L +
Sbjct: 119 QVKAGLEN 126
>01_01_0229 - 1943473-1943922
Length = 149
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 518 SVESRLSS 541
V++ + +
Sbjct: 118 QVKASMEN 125
>01_01_0231 + 1951047-1951499
Length = 150
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 362 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 517
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 518 SVESRLSS 541
V++ + +
Sbjct: 119 QVKAGMEN 126
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 29.1 bits (62), Expect = 5.1
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Frame = +2
Query: 212 LGLTPEDFLSAAAGPLVSREYYR-------PWRHLAAAARDLGSSIKSDKDKFQVNLDVQ 370
L P FLS + V YR P L A + S+K D D F +DVQ
Sbjct: 362 LAANPSGFLSTSTSSTVEETPYRTRPLSGGPLSKLQAPRSNF--SLKDDMDVFSPLVDVQ 419
Query: 371 HFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSEWC 550
F P S+ G +K D+ G TR++ E ++ E S+W
Sbjct: 420 PFTPSSGSLWDDHG-----SDETKKDDKLGEKKLSTTRKFPFIE----DNNEPHPISDWK 470
Query: 551 VVCNRTQE 574
+ N Q+
Sbjct: 471 SISNSRQD 478
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 437 RVCLQPRCSRPPF*QRFLPGRNAGR 363
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 384 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 479
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 382 GRNLC*NGGRLHRG*RQTRGEERSAWLH 465
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 437 RVCLQPRCSRPPF*QRFLPGRNAGR 363
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 265 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 167
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,047
Number of Sequences: 37544
Number of extensions: 475171
Number of successful extensions: 1411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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