Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P17
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    29   0.90 
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.3  

>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 569 QEMEYEKRRAH-LISYYESVKHAQSVQWDDIP 661
           Q  E +K RAH LI   E  K A+ + WDD+P
Sbjct: 185 QGTEQDKARAHELIQLQE--KRAKKIDWDDVP 214


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 545 EKWVDLKRQEMEYEKRRAHL--ISYYESVKHAQSVQWDDIPLPAIQVPDTTLYNTAPPSQ 718
           E WVDL R+++ Y + +  L  IS+   ++  + ++W++     IQ      Y   P  Q
Sbjct: 131 EIWVDLDREDLAYPEIQQALQSISHSIDLQERERIEWEN----TIQTSSQQKYEEIPDIQ 186


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 533 KDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQWDDIPLPAIQVPDTTL 694
           K E  K  D++RQE +YE     L +  E  +  Q V     P+ AI V DT +
Sbjct: 421 KAEDVKKQDIERQERDYE---LFLQNLEEDPELRQGVNLYKAPVKAIAVADTDM 471


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 510 TESSKCMTKMSQRNG*ISNVKKWNMKRGEPI*FHITNQ*SMLNLFSGM 653
           ++ ++ ++  S +N  +S+  K+N K   PI   + N+ S+ NLF  M
Sbjct: 216 SQKNEKVSLTSIKNTSLSHFSKFNFKYALPIHMSLENRRSLENLFRNM 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,166
Number of Sequences: 5004
Number of extensions: 53643
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)