Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_P16
(951 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 35 0.098
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 23 1.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.5
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 34.7 bits (76), Expect = 0.098
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = -2
Query: 359 PPXPPPXPXTXFXXXFCFGXXPPXXXGXPRGGXXXPPXGGPPXRGIXXXFXP 204
P PPP P T + + G P P+ PP G PP GI P
Sbjct: 14 PNQPPPFPPTPYYPMYQAGMPMPYIPQSPQYPQPGPPGGPPPFMGIQIKQEP 65
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 23.4 bits (48), Expect(3) = 1.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 542 PPXXXPPPPXXPXQ 583
PP PPPP P Q
Sbjct: 41 PPLPCPPPPICPPQ 54
Score = 23.0 bits (47), Expect(3) = 1.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 515 TXTGXGXXGPPXXXPPPP 568
T G GPP PPPP
Sbjct: 18 TFGGCCSMGPPPCPPPPP 35
Score = 21.8 bits (44), Expect(3) = 1.0
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 671 PPXXPXXVXVFPXXXPPPGXXPP 739
PP P P PPP PP
Sbjct: 48 PPICPPQFCPPPPMCPPPPPPPP 70
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 178 NXXAPKTXXGLKKKXXPRXGGPPXGGXXXPPRGXPXXXGGXXP 306
N AP T G P GGPP PP G P GG P
Sbjct: 692 NLSAPSTSAGGSSALPPITGGPP------PPPGLPPITGGPPP 728
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 178 NXXAPKTXXGLKKKXXPRXGGPPXGGXXXPPRGXPXXXGGXXP 306
N AP T G P GGPP PP G P GG P
Sbjct: 692 NLSAPSTSAGGSSALPPITGGPP------PPPGLPPITGGPPP 728
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 178 NXXAPKTXXGLKKKXXPRXGGPPXGGXXXPPRGXPXXXGGXXP 306
N AP T G P GGPP PP G P GG P
Sbjct: 275 NLSAPSTSAGGSSALPPITGGPP------PPPGLPPITGGPPP 311
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +2
Query: 542 PPXXXPPPPXXPXQSXXXXXXXXXXXXXXXXHFXPXAPXKGRKPPXXPXXVXVFPXXXPP 721
PP PPP P Q P PP P +P PP
Sbjct: 666 PPVPHPPPMGFPFQHQLTQLPGQPRPAGLPPGVPPMFNLNAPPPPGIPG----YPPAPPP 721
Query: 722 PGXXPP 739
PG PP
Sbjct: 722 PGVGPP 727
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +3
Query: 237 GPPXGGGXXPPPRXAXXXXGGXPKTKXVXKXCXRXRXRXGXLXPPPXNRP 386
GPP GG PPP GG P G PPP +RP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPGGMPPPPPP----RYPSAGPGMYPPPPPSRP 371
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 359 PPXPPPXPXTXFXXXFCFGXXPPXXXGXPRGGXXXPPXGGPPXR 228
P PPP P + F G PP G G PP PP R
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP---PPPR 354
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +3
Query: 237 GPPXGGGXXPPPRXAXXXXGGXPKTKXVXKXCXRXRXRXGXLXPPPXNRP 386
GPP GG PPP GG P G PPP +RP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPGGMPPPPPP----RYPSAGPGMYPPPPPSRP 381
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 359 PPXPPPXPXTXFXXXFCFGXXPPXXXGXPRGGXXXPPXGGPPXR 228
P PPP P + F G PP G G PP PP R
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP---PPPR 364
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.5
Identities = 32/126 (25%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Frame = +1
Query: 226 PRXGGPPXGGXXXPPRGXPXXXGGXXPKQKXXXKXVXG---KGGGXGGXXXPXLIGQXTX 396
P GGPP G RG P G P + G + GG G
Sbjct: 1491 PMRGGPPMRGGPPMFRGGPPGPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQ 1550
Query: 397 XRRXXYXXLXXGXGG--GXXGSAPXKXXPPPGXXXVXXWAPHXHGXRXXXXPXXXAXPPP 570
R L GG G G P PP G P G PPP
Sbjct: 1551 NRGPPMGGLPPPHGGMNGWRGGPP----PPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPP 1606
Query: 571 XXXPKP 588
P P
Sbjct: 1607 NGGPPP 1612
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,513
Number of Sequences: 27780
Number of extensions: 242032
Number of successful extensions: 1082
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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