Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_P08
(1146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0083 + 20753191-20754480 31 1.7
07_01_0516 - 3850252-3852870 31 2.3
07_03_1751 - 29215074-29216270 29 5.2
07_03_0177 - 14770777-14772045 29 5.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.2
10_06_0036 - 9914606-9915561,9916287-9916368 29 6.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.9
03_01_0515 - 3864796-3865425 29 6.9
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 29 6.9
>09_06_0083 + 20753191-20754480
Length = 429
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +2
Query: 428 PVXPXPTGHAXXXAXXXSLPPSXPPDXVXX----PQHSAGPPTPRXGVXXFXSXPXXSXX 595
P+ P P A LPP P D P +S+ PP P V P
Sbjct: 243 PLLPPPPADATPATPDLPLPPPPPADTYPVSPDQPLYSSPPPAPTAFVPHTPLPPVDVPA 302
Query: 596 ADPPXXAGRT 625
PP G+T
Sbjct: 303 LSPPLPHGKT 312
>07_01_0516 - 3850252-3852870
Length = 872
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 601 PPXXXRPNAXXAXRPXXXPPPXPPAAXXXXXPAP 702
PP P RP PPP PP A P P
Sbjct: 11 PPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPP 44
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.5 bits (63), Expect = 5.2
Identities = 35/128 (27%), Positives = 37/128 (28%), Gaps = 1/128 (0%)
Frame = -3
Query: 817 GPXVXGXAGXXEGXGXXXRVTAXXRGXXXXXRXGXXGRLXXVXPXGXPPGVAXXVXAXXG 638
G V G AG G G A G G G G G A G
Sbjct: 198 GAGVGGGAGGGAGGGGGLGGGA---GGGAGGGGGLGGGAGGGHGGGGGLGGGAGGGAGVG 254
Query: 637 GXXXRSAGXXRGVGLXAXAGXXXKXXNAXPGGWXSC*VLGGXNXVG-RXXGGXGXXXGXS 461
G AG G+G AG GG + GG G GG G G
Sbjct: 255 GGAGGGAGAGGGLGAGGGAGGGGGIGGGAGGGAGAGGGFGGGKGGGFGGGGGGGGGAGAG 314
Query: 460 XGMPGGXG 437
G GG G
Sbjct: 315 GGFGGGKG 322
>07_03_0177 - 14770777-14772045
Length = 422
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/68 (27%), Positives = 23/68 (33%)
Frame = -3
Query: 640 GGXXXRSAGXXRGVGLXAXAGXXXKXXNAXPGGWXSC*VLGGXNXVGRXXGGXGXXXGXS 461
GG +G G+G G GG+ +GG G GG G G
Sbjct: 312 GGGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGGFGKGGGIGGGFGKGGGLGGGGGLGGGG 371
Query: 460 XGMPGGXG 437
G GG G
Sbjct: 372 GGGGGGFG 379
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 601 PPXXXRPNAXXAXRPXXXPPPXPPAAXXXXXPAP 702
PP P A P PPP PPA P P
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 29.1 bits (62), Expect = 6.9
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 428 PVXPXPTGHAXXXAXXXSLPPSXPPDXVXXPQHSAGPP-TPRXGVXXFXSXPXXSXXADP 604
P+ P S P+ PP+ V +A PP TP V + P S A P
Sbjct: 163 PLPPTSVASPPPPGVPLSFAPNAPPEVVPSVPPAAAPPSTPVVVVPAPATSPPMSMPATP 222
Query: 605 PXXA 616
P A
Sbjct: 223 PEAA 226
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 6.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 601 PPXXXRPNAXXAXRPXXXPPPXPPAAXXXXXPAP 702
PP R N A P PPP P AA PAP
Sbjct: 718 PPPANRSNGPSAPAPPL-PPPLPAAANKRNPPAP 750
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 601 PPXXXRPNAXXAXRPXXXPPPXPPAAXXXXXPAP 702
PP P+ + P PPP PP A P P
Sbjct: 71 PPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPP 104
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 29.1 bits (62), Expect = 6.9
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 595 GRPPXXXRPNAXXAXRPXXXPPPXPPAAXXXXXPAP 702
GR RP +P PPP PP A P P
Sbjct: 103 GRTAKPYRPPPPPRKKPQFQPPPQPPRAWDPSPPPP 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,754
Number of Sequences: 37544
Number of extensions: 218988
Number of successful extensions: 1600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3479804408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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