Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P06
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    29   1.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.7  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   8.7  

>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
 Frame = +3

Query: 177 TIDDMPLDNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAI-----TLIDLTTL-SGD 338
           T++  P+D T +    VDS  +S     +V  K+ R W +K        L DL TL    
Sbjct: 180 TVNWDPVDCTVLANEQVDSHGRSWRSGAIVEKKNLRQWFLKISDYSDQLLDDLETLPKWP 239

Query: 339 DTSSNVRR--LCRKAAYPIPIDIMNPSDNLHTAAVCVYPTKVPDVCTALKAMKLEKN 503
           D    ++R  + R   + I   ++N  + L      V+ TK P+    +  + L KN
Sbjct: 240 DKVKKMQRNWIGRTTGFEISFPLLNDKETL-----TVFTTK-PETIIDVSFIALSKN 290


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +3

Query: 147  IHEMVRAIFETIDDMPLDNTFINKSNVDSQVKSI-----LYNNVVSPKDERAWLMKAITL 311
            +H++++A+F  + D P D   +  + V S +  I     +  +V++PK+    ++ A + 
Sbjct: 1194 LHDILKALFFILKDTPTDYGVLKLTEVRSFIVDITTQFCILQDVLAPKERANNIINAFSP 1253

Query: 312  IDLTTLSGDDTSSN 353
              L  L  +D   N
Sbjct: 1254 FFLELLHPNDHVRN 1267


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -2

Query: 349 DDVSSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLSKGISSIVSK 170
           +D + P  VV     + + S AL    + + L  +D        L + +L + +  +   
Sbjct: 591 EDTTFPMRVVNY--ALEYSSKALDKFAENSHLILLDMVDVGKPDLVLTLLCRWLHMVHLY 648

Query: 169 IART--ISWISKLLLKFYFLN 113
            +RT   SWI  +  KFYF++
Sbjct: 649 SSRTSITSWIYSIASKFYFID 669


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 331 ESVVKSIRVIAFISHALSSLGDTTLLY 251
           E  + +IR++ F+S +  +LGDT L Y
Sbjct: 248 ELSLDAIRIVFFMSVSAGNLGDTALSY 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,996
Number of Sequences: 5004
Number of extensions: 41119
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)