Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P06
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical p...    77   1e-14
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    34   0.17 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   6.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   6.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   6.3  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical
           protein F09E5.3 protein.
          Length = 303

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 46/97 (47%), Positives = 60/97 (61%)
 Frame = +3

Query: 273 KDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDIMNPSDNLHTAAVCVYPT 452
           KDE   + K I  IDLTTL+GDDT+S V  L ++A  P+P D   PS  +H  +VCVYP 
Sbjct: 55  KDE---IRKVIQYIDLTTLNGDDTASKVVALAKRAINPVPTD---PS--IHCGSVCVYPQ 106

Query: 453 KVPDVCTALKAMKLEKNIQVAAVATGFPSGLYPLATR 563
           ++ DV   L + KL  NI   +VA GFPSG Y L ++
Sbjct: 107 RIADVKKFLASSKLNSNI--TSVAGGFPSGQYHLKSK 141


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
 Frame = +3

Query: 237 VKSILYNNVVS-PKDERA----WLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDI 401
           V SIL N V +  KD +A    +L+KAI  + +  +  DDT  +   +  K A  +    
Sbjct: 532 VSSILQNLVTAFDKDAKAQNSPYLIKAI--LRIIVILDDDTIRHADAIAVKLAQLVESAT 589

Query: 402 MNPSDNLHT----AAVCVYPTKVPDVCTALKAMKL 494
            NP+D++HT      +CV  TK   +  +L A  L
Sbjct: 590 KNPADSVHTHFLFETICVLITKTRTIGASLDAQLL 624


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +3

Query: 198  DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 377
            D T I K   D + K +  +  V P D     +  +T+ D  TL  DDT   V  +    
Sbjct: 2823 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2879

Query: 378  AYPIPIDIMNP 410
              P+P D   P
Sbjct: 2880 GTPLPTDASGP 2890


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +3

Query: 198  DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 377
            D T I K   D + K +  +  V P D     +  +T+ D  TL  DDT   V  +    
Sbjct: 2868 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2924

Query: 378  AYPIPIDIMNP 410
              P+P D   P
Sbjct: 2925 GTPLPTDASGP 2935


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +3

Query: 198  DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 377
            D T I K   D + K +  +  V P D     +  +T+ D  TL  DDT   V  +    
Sbjct: 2868 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2924

Query: 378  AYPIPIDIMNP 410
              P+P D   P
Sbjct: 2925 GTPLPTDASGP 2935


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
            protein F59H6.5 protein.
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 147  IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 317
            + E+  A+ +     P DN  +   NVD +Q+   ++N +V   +ER +L +   +++
Sbjct: 1267 VEEVFGAVIDPTTSYPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,732
Number of Sequences: 27780
Number of extensions: 229933
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)