Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P04
         (969 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...   170   1e-42
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    74   1e-13
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    37   0.025
Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical...    29   5.0  
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   6.6  

>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score =  170 bits (414), Expect = 1e-42
 Identities = 77/159 (48%), Positives = 107/159 (67%)
 Frame = +2

Query: 209 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 388
           STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD +  CRSGSAADTQAIAD
Sbjct: 21  STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80

Query: 389 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 568
           I  YH++ + M    P  +  ++ IFR+  YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81  IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140

Query: 569 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFV 685
           G V RQ                D+ ++PN+T EE K  V
Sbjct: 141 GFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIV 179


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 53/163 (32%), Positives = 85/163 (52%)
 Frame = +2

Query: 209 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 388
           STGT+I+A  F GG+V+GADSR T G  IA++  +K+ K+T+ IY C +G+AAD   +  
Sbjct: 44  STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103

Query: 389 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 568
           +++ +L   ++  G    V TA    ++  +NY+  + A +L+ G D   G  +Y     
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162

Query: 569 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTL 697
           G                     + +FK +MTK+EA+K V   L
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRAL 205


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
 Frame = +2

Query: 245 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 424
           GG+++  DSR ++G YI+++   K+  I D++    +G AAD Q    IV  +   +++ 
Sbjct: 81  GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140

Query: 425 LGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXX 601
                 V  A+  F    Y YR   L  G +VAG+D KKG QI+ +   G   +      
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199

Query: 602 XXXXXXXXXXXDANFKPNMTKEEAKK 679
                      D ++KP MT +EA+K
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARK 225


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
 Frame = +2

Query: 248 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 427
           G+V+ A+ +        + +T+K+ +++D I C  +G  AD   + + + +    ++   
Sbjct: 42  GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101

Query: 428 GDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIGGMVQ 580
           G+   VE    + + LC   +     G        +L  GWDK  G Q+Y S P G    
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTG 158

Query: 581 RQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTL 697
            +A                    PN+  EEAK+     L
Sbjct: 159 WKATCIGSNHQAAVTLLKQEYKSPNL--EEAKQLAIKVL 195


>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 203 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 382
           P  TGTS++A ++  GVV+  D   + G     +   +  K+ D +     G  AD   +
Sbjct: 13  PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72

Query: 383 ADIV 394
            +++
Sbjct: 73  QNVI 76


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
 Frame = +2

Query: 200 APHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQA 379
           A +ST  + +A +     VI    R      +A+ VT  + +I+  + CC  G   D + 
Sbjct: 31  AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGCCAIGMIPDAKF 89

Query: 380 IADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKKGA 544
                       K + G     E  A    +L   Y       SL   +L   +D +KG 
Sbjct: 90  QIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGP 149

Query: 545 QIYSIPIGG 571
           ++Y +   G
Sbjct: 150 EVYRVDPAG 158


>AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical
           protein F53C3.12 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -3

Query: 703 PCQCVRNKFFGFFLGHIGLEIGVNVAIDVGGSG------APN*HRLALHHTTNRYGVNLS 542
           PC+ + ++FF  F+   G+    NVA    G G       PN HR+ L        V+ S
Sbjct: 105 PCKSIFSRFFSSFVQSEGIHDNANVAFAPVGDGLYACTETPNMHRVDLDSLDTLEPVDFS 164

Query: 541 SFLFVPSSN*NTSHQ 497
            ++ + +    T+HQ
Sbjct: 165 KYVALHTC---TAHQ 176


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 455 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 568
           A+ FRE  Y+Y   L     VAGW DK    +I   P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,175,827
Number of Sequences: 27780
Number of extensions: 320887
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)