Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P03
         (904 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    25   0.81 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   10.0 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   10.0 

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 65  LLCVAVRFASPPHSVSRQYIMAAKFVVLFACIALAQGSDGATRRSRLL 208
           +LC  +RF     + S  Y++ A  +  +  I       G+ +R+R+L
Sbjct: 117 VLCKIIRFLQAVVTYSSTYVLVALSIDRYDAITHPMNFSGSWKRARVL 164


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 186 RRDAPDFFKDIEH 224
           RR AP  F+DI+H
Sbjct: 84  RRKAPQSFEDIQH 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 455  GAPRPCARCSASTVPKPPWPCRSRLRAL 372
            G P+P + CS +     P  C   L  L
Sbjct: 1271 GGPQPYSACSENAFAAYPGDCTRYLHCL 1298


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 94  RCEPDCNTEEC 62
           RC+ +CNT  C
Sbjct: 501 RCDEECNTYAC 511



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 91  CEPDCNTEECV 59
           C  DCN  EC+
Sbjct: 543 CNEDCNNPECL 553


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,030
Number of Sequences: 336
Number of extensions: 2114
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)