Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_P02
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    82   5e-16
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    29   3.5  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      28   8.1  

>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
 Frame = +2

Query: 404 RSACPRCGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIKHKGEINGKSTAAHAAVLA 583
           +S CP C  +R YFCY C  P+P +    P  KLP  VDI+KH  E N KS+A H  ++A
Sbjct: 344 KSTCPGCKSNRKYFCYDCRTPMPGVF--TPTVKLPCAVDIVKHPMEKNSKSSALHCKIVA 401

Query: 584 PRDVTVYTYPDIPDYPTDGK-----VVLLFPGAEAKSVRD 688
           P    V+ YP++ DY  D +       ++FP   A SV +
Sbjct: 402 PDQTRVFDYPNVHDYSQDSEDERQGTAIIFPSKSAISVEE 441


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 136 PKNVVHFIYFIINLATNKFIFSLELKQVNKILRNS 32
           P NV+ +IY   +     F+F+L L Q+  I+ N+
Sbjct: 428 PTNVIEYIYMTCSWMMGVFVFALLLGQIRDIVSNA 462


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 136 PKNVVHFIYFIINLATNKFIFSLELKQVNKILRNS 32
           P NV+ +IY   +     F+F+L L Q+  I+ N+
Sbjct: 428 PTNVIEYIYMTCSWMMGVFVFALLLGQIRDIVSNA 462


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 136 PKNVVHFIYFIINLATNKFIFSLELKQVNKILRNS 32
           P NV+ +IY   +     F+F+L L Q+  I+ N+
Sbjct: 428 PTNVIEYIYMTCSWMMGVFVFALLLGQIRDIVSNA 462


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 554 STAAHAAVLAPRDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 724
           +++   A  + R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 632 NSSLDTAANSSRALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 688


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 554 STAAHAAVLAPRDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 724
           +++   A  + R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 630 NSSLDTAANSSRALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 686


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 554 STAAHAAVLAPRDVTVYTYPDIPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYS 724
           +++   A  + R ++  +Y DIP  PT    V   P +       L +QQQN   YS
Sbjct: 630 NSSLDTAANSSRALSPVSYNDIPASPTMCAQVFNLPKSTESEHHQLTSQQQNTTHYS 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,993
Number of Sequences: 27780
Number of extensions: 356409
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)