Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_P01
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 40 6e-04
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 29 0.67
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 1.2
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 29 1.2
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 28 1.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 28 1.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 28 1.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.2
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 8.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 8.2
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 525 IKGRRMHMEDRF--IIN---ENVNNTGISLFAIFDGHGGEFAANYAKDHL 659
++G R+ MED ++N N +N S F +FDGHGG+ A Y + HL
Sbjct: 29 MQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHL 78
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 522 AIKGRRMHMEDRF--IINENVN--NTGISLFAIFDGHGGEFAANYAKDHLIQNL 671
+++G R+ MED I++ + + FA++DGHGG+ A + +L Q L
Sbjct: 28 SMQGWRISMEDAHSAILSMECSAVKDPVDFFAVYDGHGGDKVAKWCGSNLPQIL 81
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 717 SDISREIIEEYAPKEENVERK---TSFKKSVSTADDTSKKEITDP 842
+D+ E+IE + +E+NV+ + TS T +DTS T P
Sbjct: 388 ADVDEEVIETTSLEEKNVDNQEFVTSISNGNQTLEDTSHSPQTQP 432
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 561 IINENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKIVELNA 698
+I+ N++ + IFDGH G + + + HL+ + ++ + A
Sbjct: 104 VIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTA 149
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 537 RMHMEDRFI-INENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKI 683
R MED I + + N A++DGH G A++Y + +L + L K+
Sbjct: 83 RRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEKV 132
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 28.3 bits (60), Expect = 1.5
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
Frame = +3
Query: 270 DAPVSYLWKMVRLYFLRSEVVVITLAIVIFLMYLQSIELWSRTMLSRLSQAMNPMSAVQR 449
DAP+ YL + L L T + + +++ + +S L +S +
Sbjct: 762 DAPIRYLSDLSNLELL------FTKHVAVLILHPLVRDYYSLDELMEMSDLRKGGFWEKF 815
Query: 450 MKLMEGSDADKQSWELKGTLSAAYAIKGRRMHMEDRFIINENVNNTGISLFAIFDGHGGE 629
K +G DA+K++ + KGT I R + ++ TG+ + I G
Sbjct: 816 GKAFKGKDAEKKNVKKKGTFGVPLEILVERNNA-------QSTVGTGVGVKHIPAFIGNT 868
Query: 630 FAANYAKDHLIQNLYNKIVELNAFKE-GKISDISREIIE 743
AA KD + ++ K + KE + D+S + I+
Sbjct: 869 LAAMKRKDMSVVGVFRKNGNIRRLKELSDMLDVSPDSID 907
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 747 YAPKEENVERKTSFKKSVSTADDTSK 824
+ P+ ENVE T F+K++S +D+ +K
Sbjct: 892 FVPQTENVEDLTYFEKNISGSDNINK 917
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 880 NDXXALESWASNSGSVISFXDVSSAVLTDFLKLVL 776
N+ L S ++ F +SSA+LTD++ VL
Sbjct: 528 NETDFLPSAFLQEDHIVQFQSISSALLTDYISSVL 562
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 657 LIQNLYNKIVELNAFKEGKISDISREIIEEYAPKEENVERKTSFKKSVSTADDTSKKE 830
LI+ YN+ L K+G IS + +E + + + NV RK++ STA K++
Sbjct: 101 LIRLGYNE-KSLGELKQGTISRLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRK 157
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 375 SIELWSRTMLSRLSQAMNPMSAVQRMKLMEGSDADKQSWELKGTLSAAYAIKGR 536
+++L L L + N ++ + + K+++ D KQSWE + ++ + I+ +
Sbjct: 1620 TLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESFNSDFEIRAK 1673
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 347 YCDLLNVSSKYRIMESNNAKQTVASDESY 433
Y +LLN S +YR + NA + + D +
Sbjct: 450 YAELLNFSEQYRRLSIKNATKNLTKDNFF 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,851
Number of Sequences: 5004
Number of extensions: 54694
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -