Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O24
         (945 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     31   1.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.3  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    29   7.1  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +3

Query: 711 PPKXXPXXKXXGXGGXXKXXPPPPXKKXKKXPPLSXGGXXPPG 839
           PPK  P  K    G   K  PP P  K K  PP   G    PG
Sbjct: 180 PPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPP-KPGPKPKPG 221


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
 Frame = +2

Query: 617  GGXGXPPXKXGVXXXPXK------RGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPP 778
            GG   PP   G+   P        RGG P         P   PP      GG     P P
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP----PTP 1201

Query: 779  PXKKKXKXXPPLXGGXXPP 835
            P        P + GG  PP
Sbjct: 1202 PGAPAPPMPPGVPGGPPPP 1220


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 713 PKXXPPXKKXXXGGXXKKXPPPPXKKKXKXXPPLXGGXXPP 835
           P   PP K        K  PPPP  K     PP  G   PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366



 Score = 29.5 bits (63), Expect = 4.1
 Identities = 19/64 (29%), Positives = 20/64 (31%)
 Frame = +2

Query: 632 PPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXKXXPP 811
           PP   G    P  +G  P         P   PP       G  K  PPPP  K     PP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP-------GGKKGGPPPPPPKGGASRPP 390

Query: 812 LXGG 823
              G
Sbjct: 391 AAPG 394



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 683 PQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXKXXPPLXGGXXPP 835
           P  K      P   PP      G      PPP  KK     PP  GG   P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 711 PPKXXPXXKXXGXGGXXKXXPPPPXKKXKKXPPLSXGGXXPP 836
           PP   P           K  PPPP  K    PP + G   PP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
 Frame = +2

Query: 632 PPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKK--XKXX 805
           PP        P  +G  P       K P   PP K     G     PPPP  KK      
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPA---KGPPPPPPPK-----GPSPPPPPPPGGKKGGPPPP 380

Query: 806 PPLXGGXXPP 835
           PP  G   PP
Sbjct: 381 PPKGGASRPP 390



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 711 PPKXXPXXKXXGXGGXXKXXPPPPXKKXKKXPPLSXG 821
           PPK          GG     PPPP K     PP + G
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPG 394


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +2

Query: 662 PXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPP---PXKKKXKXXPPLXGG 823
           P K    P  +      PK  PP       G     PPP   P   K +  PPL  G
Sbjct: 578 PLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPPPPLKPG 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.146    0.489 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,731,412
Number of Sequences: 37544
Number of extensions: 178572
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)