Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O24
(945 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 3.7
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 3.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.5
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +2
Query: 617 GGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXP--KXXPPXKKXXXGGXXKKXPPPPXKK 790
G G PP P GG P + P PP + G PPPP +
Sbjct: 312 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR- 370
Query: 791 KXKXXPPLXGGXXPP 835
PP G PP
Sbjct: 371 --PPAPPSGHGMIPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +2
Query: 617 GGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXP--KXXPPXKKXXXGGXXKKXPPPPXKK 790
G G PP P GG P + P PP + G PPPP +
Sbjct: 322 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR- 380
Query: 791 KXKXXPPLXGGXXPP 835
PP G PP
Sbjct: 381 --PPAPPSGHGMIPP 393
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/53 (24%), Positives = 17/53 (32%)
Frame = +2
Query: 677 GXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXKXXPPLXGGXXPP 835
G P+ + P PP + PPPP P + G PP
Sbjct: 599 GTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPP 651
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/53 (24%), Positives = 17/53 (32%)
Frame = +2
Query: 677 GXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXKXXPPLXGGXXPP 835
G P+ + P PP + PPPP P + G PP
Sbjct: 425 GTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPP 477
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/72 (25%), Positives = 18/72 (25%)
Frame = +2
Query: 620 GXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXK 799
G G PP P R G P P G PPP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
Query: 800 XXPPLXGGXXPP 835
PP G PP
Sbjct: 311 SLPPPQAGGSPP 322
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/72 (25%), Positives = 18/72 (25%)
Frame = +2
Query: 620 GXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXK 799
G G PP P R G P P G PPP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
Query: 800 XXPPLXGGXXPP 835
PP G PP
Sbjct: 332 SLPPPQAGGSPP 343
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/72 (25%), Positives = 18/72 (25%)
Frame = +2
Query: 620 GXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKKKXK 799
G G PP P R G P P G PPP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
Query: 800 XXPPLXGGXXPP 835
PP G PP
Sbjct: 317 SLPPPQAGGSPP 328
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P P G PPPP
Sbjct: 722 ITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 791 KXKXXPPLXGGXXPPG 838
K PP PPG
Sbjct: 779 GFKGGPP---PPPPPG 791
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/75 (28%), Positives = 24/75 (32%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P PP GG PPPP
Sbjct: 738 ITGGPPPPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPP---GGFKGGPPPPPPPG 791
Query: 791 KXKXXPPLXGGXXPP 835
P+ PP
Sbjct: 792 MFAPMAPVIPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P P G PPPP
Sbjct: 722 ITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 791 KXKXXPPLXGGXXPPG 838
K PP PPG
Sbjct: 779 GFKGGPP---PPPPPG 791
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/75 (28%), Positives = 24/75 (32%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P PP GG PPPP
Sbjct: 738 ITGGPPPPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPP---GGFKGGPPPPPPPG 791
Query: 791 KXKXXPPLXGGXXPP 835
P+ PP
Sbjct: 792 MFAPMAPVIPDYLPP 806
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/77 (28%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Frame = +2
Query: 620 GXGXPPXKXGVXXXPXKRG-----GXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPX 784
G PP G P K G G P + P PP K G PP P
Sbjct: 95 GAQGPPGTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPD 154
Query: 785 KKKXKXXPPLXGGXXPP 835
K PP G P
Sbjct: 155 GNKGPLGPPGPPGPEGP 171
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P P G PPPP
Sbjct: 305 ITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 791 KXKXXPPLXGGXXPPG 838
K PP PPG
Sbjct: 362 GFKGGPP---PPPPPG 374
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/75 (28%), Positives = 24/75 (32%)
Frame = +2
Query: 611 VXGGXGXPPXKXGVXXXPXKRGGXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPXKK 790
+ GG PP G+ P GG P P PP GG PPPP
Sbjct: 321 ITGGPPPPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPP---GGFKGGPPPPPPPG 374
Query: 791 KXKXXPPLXGGXXPP 835
P+ PP
Sbjct: 375 MFAPMAPVIPDYLPP 389
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/77 (28%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Frame = +2
Query: 620 GXGXPPXKXGVXXXPXKRG-----GXPQKKXXXXKXPKXXPPXKKXXXGGXXKKXPPPPX 784
G PP G P K G G P + P PP K G PP P
Sbjct: 93 GAQGPPGTPGRAGRPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQ 152
Query: 785 KKKXKXXPPLXGGXXPP 835
K PP G P
Sbjct: 153 GNKGPLGPPGPPGPEGP 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.146 0.489
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,690
Number of Sequences: 27780
Number of extensions: 103178
Number of successful extensions: 498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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