Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O22
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
05_04_0142 - 18372751-18373338 30 2.8
10_08_0618 + 19307658-19308584,19308690-19309082 29 3.8
11_06_0012 + 19251085-19251666 29 6.6
10_08_0619 + 19312935-19313570 29 6.6
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
06_03_0218 + 18219956-18220555 28 8.7
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.7
03_04_0061 - 16949038-16950006 28 8.7
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 271 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 429
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>05_04_0142 - 18372751-18373338
Length = 195
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 536 TQPSLERTTYTETEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL* 357
T S ++Y T + R E+GG G++QGR R+A A R +RL +
Sbjct: 36 TSGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAV 94
Query: 356 SC 351
+C
Sbjct: 95 AC 96
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 444 FLPSGS---VALSHSSRCRYLSFGVGRSLQAGL 533
FLP G V ++ S R R + FGVGR + AGL
Sbjct: 400 FLPGGDGEGVDMTGSKRIRMMPFGVGRRMCAGL 432
>11_06_0012 + 19251085-19251666
Length = 193
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 518 RTTYTETEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVS 363
RTT T E A R+RH RR+ GG G R R G+ G +V+
Sbjct: 69 RTTATAVEAQQA-LRRRRHGGRRDSGGGAGG-RGSRGGVGDLGSCGGTAIVA 118
>10_08_0619 + 19312935-19313570
Length = 211
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 444 FLPSGS---VALSHSSRCRYLSFGVGRSLQAGL 533
FLP G V ++ S R R + FGVGR + AG+
Sbjct: 112 FLPGGDGEGVDMTGSKRIRMMPFGVGRRMCAGI 144
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/84 (29%), Positives = 38/84 (45%)
Frame = +3
Query: 279 FFHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSG 458
FF P ++ ++ RS ++ + T + + G SL + LP + Y S P
Sbjct: 94 FFLNDLPGNDFNQLFRSLEKIKTSTTM-----YHKGDSLPSYYISGLPKS-YYSRLFPRQ 147
Query: 459 SVALSHSSRCRYLSFGVGRSLQAG 530
SV L HSS C + V L+AG
Sbjct: 148 SVHLFHSSYCLHWRSQVPEGLEAG 171
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 103 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 258
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 458 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 363
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 479 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 378
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 353 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 469
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,467,706
Number of Sequences: 37544
Number of extensions: 553482
Number of successful extensions: 1822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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