Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O22
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.63 
AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 358 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 480
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical
           protein F38H12.3 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 158 YRSPQPNDRAQRVSERGSGRAPNTQTASPRALADSINAKS*GIP 27
           +  P+P+  +  VS      +P+T + S     DS+N K  G P
Sbjct: 5   FLDPRPSSSSSSVSTSSMSSSPSTSSESCAVCGDSVNGKRYGAP 48


>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 571 RRSGRAERGVRAHSPAWSERPT-PKLRYLQREL*ESATLPEGRKADRYPVSGRVG 410
           RRS  + +  RAH+P W    +  ++ Y++    E+ +L   RK  ++ +SGR G
Sbjct: 27  RRSCFSVKEARAHNPEWGPAASREEVAYVRSS--ETGSLQITRKLMKFSISGRRG 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,134
Number of Sequences: 27780
Number of extensions: 391225
Number of successful extensions: 1020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)