Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O21
         (1005 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    43   8e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    34   0.036
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.048
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.15 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.26 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.34 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -1

Query: 663 PXGXPPPXXGGXPXXPPPPXGGGXTXPPPPPXXP 562
           P   P P  GG P  PPPP   G   PPPPP  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 34.7 bits (76), Expect = 0.021
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 680 PKXXCFPXGXPPPXGGXXPXXPPPPXGGGXXGPPPP 573
           P     P   P P  G  P  PPPP   G   PPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 33.5 bits (73), Expect = 0.048
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 651 PPPXXGGXPXXPPPPXGGGXTXPPPPP 571
           P P     P  PP P  GG   PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = -1

Query: 663 PXGXPPPXXGGXPX---XPPPPXGGGXTXPPPPPXXP 562
           P   P P           PPPP G     PPPPP  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 538 PXKXPGPXRXXXGGGGPXXPPPXGGGGXXGXXPP 639
           P   P P      GG P  PPP G  G     PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 33.9 bits (74), Expect = 0.036
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -2

Query: 728 GXLXXGXGAPXXGXXGPKXXCFPXGXPPPXGGXXPXXPPPPXGGGXXGPPP 576
           G L  G G       G      P G   P  G     PPPP G G   PPP
Sbjct: 92  GSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.048
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -1

Query: 708 GGPXXGXPGAQXGLFPXGXPPPXXGGXPXXPPPPXGGGXTXPPPPPXXP 562
           G P  G  G+     P   PPP        P PP G     PPPP   P
Sbjct: 323 GKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 29.9 bits (64), Expect = 0.59
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = -1

Query: 723 PFXGXGGPXXGXPGAQXGLFPXGXP--PPXXGGXPXXPPPPXGGGXTXPPPPPXXPXGP 553
           P      P    P A   L P G P  PP     P  PP P  G    PP PP  P  P
Sbjct: 421 PSLPPSAPPSLPPSAPPSL-PMGAPAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAPAPP 477



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = -1

Query: 663 PXGXPPPXXGGXPXXPPPPXGGGXTXPPPPPXXPXGP 553
           P    P      P   PPP  G  + PP  P  P  P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = -1

Query: 663 PXGXPPPXXGGXPXXPPPPXG-GGXTXPPPPPXXPXGP 553
           P   PP      P   PP    G    PP PP  P  P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -1

Query: 648 PPXXGGXPXXPPPPXGGGXTXPPPPPXXPXGP 553
           PP   G P  PP P       PP P   P  P
Sbjct: 457 PPLPAGMPAAPPLPP-AAPAPPPAPAPAPAAP 487



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 651 PPPXXGGXPXXPPPPXGGGXTXPPPPP 571
           P P  G     PPPP     T   PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 554 GPXGXXGGGGGXVXPPPXGGGGXXGXPPXXGG--GXPXGN-XPXW 679
           GP G  GG GG    P   GGG  G     GG  G P G+  P W
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +2

Query: 554 GPXGXXGGGGGXVXPPP---XGGGGXXGXPPXXGGGXPXGNXPXWAPGXP 694
           G  G  GGG G   P P    G GG  G     GG    G  P    G P
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 551 PGPXGXXGGGGGXVXPPPXGGGGXXGXPPXXGGGXPXG 664
           PGP G  G GG        GG G  G  P    G P G
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +2

Query: 563 GXXGGGGGXVXPPPXGGGGXXGXPPXXGGG-XPXGNXPXWAPGXP 694
           G  GG GG       G GG  G P   GGG    G  P    G P
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +2

Query: 554 GPXGXXGGGGGXVXPPPXG-GGGXXGXPPXXG--GGXPXG 664
           G  G  GGG G     P G GGG  G     G  GG P G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 633 GXPXXPPPPXGGGXTXPPPPPXXP 562
           G P  PPPP G      PPPP  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.3 bits (65), Expect = 0.45
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 648 PPXXGGXPXXPPPPXGGGXTXPPPPP 571
           PP  G  P  PPPP     + PPPPP
Sbjct: 5   PP--GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 662 PXGXPPPXGGXXPXXPPPPXGGG 594
           P   PPP G   P  PPPP   G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 680  PKXXCFPXGXPPPXGGXXPXXPPPPXGGGXXGPPPPXXXRXGP 552
            P     P   PPP     P   PP   G    PPPP      P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -1

Query: 663  PXGXPPPXXGGXPXXPPPPXGGGXTXPPPPP 571
            P    PP   G P  PPPP         P P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 648 PPXXGGXPXXPPPPXGGGXTXPPP 577
           P   GG P  PPPP G     P P
Sbjct: 280 PMGPGGAPLVPPPPPGMVMASPSP 303


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = -1

Query: 663 PXGXPPPXXGGXPXXPPPPXGG-GXTXPPPPPXXPXGP 553
           P   PPP     P   PP         PP PP  P  P
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = -1

Query: 729 GXPFXGXGGPXXGXPGAQXGLFPXGXPPPXXGGXPXXPPPPXGGGXTXPPPPP 571
           G P      P    PG      P G P P  G  P  P  P   G T PP  P
Sbjct: 513 GMPNLNMSQPPMVPPGMA---LPPGMPAPFPG-YPAVPAMPGIPGATAPPGAP 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,515
Number of Sequences: 5004
Number of extensions: 30749
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)