Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O19
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    32   0.097
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    32   0.097
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   3.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   6.3  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   8.4  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 258 RKLSDTLNMRKRAMELLKVSKDKRALKFLKRRIG 359
           R+++      +R MEL++ S+DKRA K  K+R+G
Sbjct: 43  REVAGFAPYERRVMELIRNSQDKRARKLAKKRLG 76


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 258 RKLSDTLNMRKRAMELLKVSKDKRALKFLKRRIG 359
           R+++      +R MEL++ S+DKRA K  K+R+G
Sbjct: 43  REVAGFAPYERRVMELIRNSQDKRARKLAKKRLG 76


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 383 SVKNLATCSLR*GRQPPRLITITI 454
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 152  WPQGFSQXKAIRIRPARPXGSSNENTPSLSXEFKYAKVVGHAQYEKEG 295
            W QG S+ K  RI+P       NE+T       ++++  G     K+G
Sbjct: 1315 WTQGLSKDKVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKG 1362


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 447 MVMSLGGCLPHLSEHVAKFFTLPLGADVCA 358
           +V SL G    L +  A+FFT PL ++VCA
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCA 573


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 129 TKQLKSSAGRKGSHKXKPSELGQL-DLKGLQTKTLQVCPXNLSTRKLSDTLNMRKRAMEL 305
           T+++ +SA  K S    P+  G L D +GL T   +    N     +SDTL+  +R   L
Sbjct: 190 TRKVDASALEKKSCLL-PNSSGTLTDQRGLDTIKHKSIEQNEILHVISDTLSSPRRRNPL 248

Query: 306 LKVSKDKRALKFLKRRIGHTH 368
           L   K      F K ++ +++
Sbjct: 249 LSSPKTPLRRSFSKSKVRNSN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,886
Number of Sequences: 5004
Number of extensions: 31084
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)