Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O19
         (901 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                54   7e-07
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    54   7e-07
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    54   7e-07
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    54   7e-07
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    54   7e-07
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    38   0.050
D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.               33   1.4  
BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymera...    33   1.4  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 34/67 (50%), Positives = 39/67 (58%)
 Frame = +1

Query: 223 KHSKFVR*I*VRESCRTRSI*ERGLWSYLRCQKTSVL*SS*SDELGTHIRAKRKREELSN 402
           KH+KFVR + +RE C      ER     L+  K           +GTHIRAKRKREELSN
Sbjct: 35  KHTKFVRDM-IREVCGFAPY-ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSN 92

Query: 403 VLAQMRK 423
           VLA MRK
Sbjct: 93  VLAAMRK 99



 Score = 48.0 bits (109), Expect = 5e-05
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = +3

Query: 288 KRAMELLKVSKDKRALKFLKRRIGHTHPR 374
           +RAMELLKVSKDKRALKF+K+R+G TH R
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVG-THIR 82


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 34/67 (50%), Positives = 39/67 (58%)
 Frame = +1

Query: 223 KHSKFVR*I*VRESCRTRSI*ERGLWSYLRCQKTSVL*SS*SDELGTHIRAKRKREELSN 402
           KH+KFVR + +RE C      ER     L+  K           +GTHIRAKRKREELSN
Sbjct: 35  KHTKFVRDM-IREVCGFAPY-ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSN 92

Query: 403 VLAQMRK 423
           VLA MRK
Sbjct: 93  VLAAMRK 99



 Score = 48.0 bits (109), Expect = 5e-05
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = +3

Query: 288 KRAMELLKVSKDKRALKFLKRRIGHTHPR 374
           +RAMELLKVSKDKRALKF+K+R+G TH R
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVG-THIR 82


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 34/67 (50%), Positives = 39/67 (58%)
 Frame = +1

Query: 223 KHSKFVR*I*VRESCRTRSI*ERGLWSYLRCQKTSVL*SS*SDELGTHIRAKRKREELSN 402
           KH+KFVR + +RE C      ER     L+  K           +GTHIRAKRKREELSN
Sbjct: 35  KHTKFVRDM-IREVCGFAPY-ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSN 92

Query: 403 VLAQMRK 423
           VLA MRK
Sbjct: 93  VLAAMRK 99



 Score = 48.0 bits (109), Expect = 5e-05
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = +3

Query: 288 KRAMELLKVSKDKRALKFLKRRIGHTHPR 374
           +RAMELLKVSKDKRALKF+K+R+G TH R
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVG-THIR 82


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 34/67 (50%), Positives = 39/67 (58%)
 Frame = +1

Query: 223 KHSKFVR*I*VRESCRTRSI*ERGLWSYLRCQKTSVL*SS*SDELGTHIRAKRKREELSN 402
           KH+KFVR + +RE C      ER     L+  K           +GTHIRAKRKREELSN
Sbjct: 35  KHTKFVRDM-IREVCGFAPY-ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSN 92

Query: 403 VLAQMRK 423
           VLA MRK
Sbjct: 93  VLAAMRK 99



 Score = 48.0 bits (109), Expect = 5e-05
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = +3

Query: 288 KRAMELLKVSKDKRALKFLKRRIGHTHPR 374
           +RAMELLKVSKDKRALKF+K+R+G TH R
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVG-THIR 82


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 34/67 (50%), Positives = 39/67 (58%)
 Frame = +1

Query: 223 KHSKFVR*I*VRESCRTRSI*ERGLWSYLRCQKTSVL*SS*SDELGTHIRAKRKREELSN 402
           KH+KFVR + +RE C      ER     L+  K           +GTHIRAKRKREELSN
Sbjct: 35  KHTKFVRDM-IREVCGFAPY-ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSN 92

Query: 403 VLAQMRK 423
           VLA MRK
Sbjct: 93  VLAAMRK 99



 Score = 48.0 bits (109), Expect = 5e-05
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = +3

Query: 288 KRAMELLKVSKDKRALKFLKRRIGHTHPR 374
           +RAMELLKVSKDKRALKF+K+R+G TH R
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVG-THIR 82


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 37.9 bits (84), Expect = 0.050
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +3

Query: 306 LKVSKDKRALKFLKRRIGHTHPR 374
           LKVSKDKRALKF+K+R+G TH R
Sbjct: 1   LKVSKDKRALKFIKKRVG-THIR 22



 Score = 35.1 bits (77), Expect = 0.35
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +1

Query: 355 LGTHIRAKRKREELSN 402
           +GTHIRAKRKREELSN
Sbjct: 17  VGTHIRAKRKREELSN 32


>D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.
          Length = 702

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KQLKSSAGRKGSHKXKPSELGQLDLKGLQTKTLQVCPXNLSTR-KLSDTLNMRKRAMELL 308
           K+LK++  ++   K K  E  Q   K  Q +  QV   N   R K  + L+ + +AME L
Sbjct: 218 KKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEEL 277

Query: 309 KVSKDKR 329
           K  ++KR
Sbjct: 278 KAEREKR 284


>BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymerase
           II complex component, homolog (S. cerevisiae) protein.
          Length = 585

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KQLKSSAGRKGSHKXKPSELGQLDLKGLQTKTLQVCPXNLSTR-KLSDTLNMRKRAMELL 308
           K+LK++  ++   K K  E  Q   K  Q +  QV   N   R K  + L+ + +AME L
Sbjct: 101 KKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEEL 160

Query: 309 KVSKDKR 329
           K  ++KR
Sbjct: 161 KAEREKR 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,295,345
Number of Sequences: 237096
Number of extensions: 1260303
Number of successful extensions: 2146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)