Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O16
         (1005 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.3  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    30   3.0  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    29   6.9  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    29   6.9  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 698 FSPLXPXPXXPPFXXPXPGPFPXXXXSTPPPP 793
           + P  P P  PP   P  GP P      PPPP
Sbjct: 83  YVPPAPLPPPPPPASPCCGPSPVPAPCCPPPP 114


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 713 PXPXXPPFXXPXPGPFPXXXXSTPPPPLC 799
           P P  P    P P P P      PPPP C
Sbjct: 243 PPPPSPVCMPPPPPPCPMPIPCPPPPPAC 271



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 692 PVFSPLXPXPXXPPFXXPXPGPFPXXXXSTPPP 790
           P  SP+   P  PP   P P P P    S PPP
Sbjct: 244 PPPSPVCMPPPPPPCPMPIPCPPPPPACSCPPP 276


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 713 PXPXXPPFXXPXPGPFPXXXXSTPPPP 793
           P P  PP   P P P P     TP PP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPP 288


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 713 PXPXXPPFXXPXPGPFPXXXXSTPPPP 793
           P P  PP   P P P P     TP PP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPP 298


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 704 PLXPXPXXPPFXXPXPGPFPXXXXSTPPPPLC 799
           P  P P  PP   P P P        PPPP+C
Sbjct: 44  PCPPPPICPPQFCPPP-PMCPPPPPPPPPPMC 74


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +2

Query: 704 PLXPXPXXPP---FXXPXPGPFPXXXXSTPPPP 793
           P  P P  PP      P P P P     +PPPP
Sbjct: 460 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPP 492


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +2

Query: 704 PLXPXPXXPP---FXXPXPGPFPXXXXSTPPPP 793
           P  P P  PP      P P P P     +PPPP
Sbjct: 467 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPP 499


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +2

Query: 701 SPLXPXPXXPPFXXPXPGPFPXXXXSTPP 787
           SPL P P  PP   P P P P     TPP
Sbjct: 633 SPLNPQPPPPPSPSPEPEPEPKPPV-TPP 660


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 692 PVFSPLXPXPXXPPFXX-PXPGPFPXXXXSTPPPP 793
           PV  P  P P   P    P P P P    + PPPP
Sbjct: 542 PVREPTPPPPPREPTPREPTPEPEPVREPTPPPPP 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,203,491
Number of Sequences: 27780
Number of extensions: 140043
Number of successful extensions: 831
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)