Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O13
(937 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 53 3e-07
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 38 0.009
11_04_0003 - 11999569-11999754,12000061-12000139,12000208-120003... 31 1.7
09_06_0290 - 22057573-22057758,22057846-22057938,22058047-220581... 29 4.0
12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721... 29 7.0
11_02_0087 + 8188009-8188241,8188313-8188423,8188492-8188570,818... 29 7.0
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868... 29 7.0
12_01_0152 - 1168928-1169377 28 9.3
11_01_0155 - 1287003-1287452 28 9.3
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 53.2 bits (122), Expect = 3e-07
Identities = 30/64 (46%), Positives = 37/64 (57%)
Frame = +3
Query: 93 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 272
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 273 YHQK 284
QK
Sbjct: 61 ISQK 64
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 38.3 bits (85), Expect = 0.009
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 81 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 260
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 261 VY 266
Y
Sbjct: 163 AY 164
>11_04_0003 -
11999569-11999754,12000061-12000139,12000208-12000318,
12000390-12000523
Length = 169
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 23 YRESLRFFGILFKRSFRRERDRQNGQSEVF 112
Y+E LR FKR ++R R R+N + +F
Sbjct: 73 YQEFLRILDFAFKRYYQRGRQRKNSRERIF 102
>09_06_0290 -
22057573-22057758,22057846-22057938,22058047-22058125,
22058195-22058305,22058377-22058634,22058712-22059088,
22059405-22059449
Length = 382
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 23 YRESLRFFGILFKRSFRRERDRQNGQSEVF 112
Y+E LR + FKR ++R R+N + +F
Sbjct: 255 YQEFLRIIDLAFKRYYQRGEQRKNSRERIF 284
>12_01_0790 +
7216452-7216489,7216664-7216722,7217268-7218750,
7218828-7218892,7219023-7219080,7219152-7219262,
7219332-7219410,7219521-7219613,7219701-7219886
Length = 723
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 23 YRESLRFFGILFKRSFRRERDRQNGQSEV 109
Y+E LRF + FKR ++R R+N + +
Sbjct: 596 YQEFLRFIDLAFKRYYQRGGQRKNSRERI 624
>11_02_0087 +
8188009-8188241,8188313-8188423,8188492-8188570,
8188662-8188754,8188877-8188897
Length = 178
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 23 YRESLRFFGILFKRSFRRERDRQNGQSEVF 112
Y+E LR + FKR ++R R+N + +F
Sbjct: 106 YQEFLRILDLAFKRYYQRGGQRKNSRERIF 135
>07_03_0288 +
16285485-16285721,16285811-16286184,16286499-16286892,
16286917-16287806,16291189-16291446,16291518-16291628,
16291697-16291775,16291880-16291972,16292095-16292280
Length = 873
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 23 YRESLRFFGILFKRSFRRERDRQNGQSEVF 112
Y+E LR + FKR ++R R+N + +F
Sbjct: 746 YQEFLRILDLAFKRYYQRGGQRKNSRERIF 775
>12_01_0152 - 1168928-1169377
Length = 149
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 195 KVTGGVASKLSKIRVVRKAIARVYIVYHQKMXGQNS 302
+V GG K S+I +R+AIA+ + Y+QK + S
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQKYVDEAS 107
>11_01_0155 - 1287003-1287452
Length = 149
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 195 KVTGGVASKLSKIRVVRKAIARVYIVYHQKMXGQNS 302
+V GG K S+I +R+AIA+ + Y+QK + S
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQKYVDEAS 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,981,769
Number of Sequences: 37544
Number of extensions: 93957
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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