Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O12
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.8  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.5  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = +3

Query: 246 LISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALM 425
           L+S   LY      +LV    +  F   +LF+ F+  SC+V  E  +      + +  L+
Sbjct: 361 LVSERMLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMVKGESNF---FLDNRI-FLL 416

Query: 426 NFIFNTQGLTTSLFFSLTAVYLYSTMLRWS 515
             I N  G+  ++   L   ++ +   RWS
Sbjct: 417 ERIMNRYGIPMTIDTFLLMQFILAKSNRWS 446


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 225 CALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLV 368
           C LLP  +  + +      ++ +V  +A   F +S+L V F+S + ++
Sbjct: 423 CFLLPISMFWFAWTCYPHHIHWIVPIIASAFFGFSLLIVFFVSYNYII 470


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 345 IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRL 247
           IP+  C   I  +L  +L Y +  LC   C  L
Sbjct: 806 IPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNL 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,115
Number of Sequences: 5004
Number of extensions: 58786
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)