Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O12
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    27   0.31 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    26   0.41 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.8  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +3

Query: 270 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 449
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 72  RLNKLAVFIVAGAVGVFSVLTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 131

Query: 450 LTTSLFFSLTAVY 488
               ++   +A +
Sbjct: 132 TLFFIYVQPSATF 144


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 270 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 449
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 73  RLNKLAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 132

Query: 450 LTTSLFF 470
              +LFF
Sbjct: 133 ---TLFF 136


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +3

Query: 264 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 350
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 90  VFKIAPIFKGIGYATCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +3

Query: 264 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 350
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 143 VFKIAPIFKGIGYATCVLSCWTNIYYIII 171


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 152 LYNFKKSKRWRYRNEAY 202
           +Y+F+ S+ WR  N  +
Sbjct: 210 VYDFRNSRSWRITNNLF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,868
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)